1ska

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:24, 30 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ska.png|left|200px]]
 
-
<!--
+
==Crystallographic snapshots of Aspergillus fumigatus phytase revealing its enzymatic dynamics==
-
The line below this paragraph, containing "STRUCTURE_1ska", creates the "Structure Box" on the page.
+
<StructureSection load='1ska' size='340' side='right'caption='[[1ska]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ska]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SKA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.69&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_1ska| PDB=1ska | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ska FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ska OCA], [https://pdbe.org/1ska PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ska RCSB], [https://www.ebi.ac.uk/pdbsum/1ska PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ska ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PHYA_ASPFU PHYA_ASPFU] Catalyzes the hydrolysis of inorganic orthophosphate from phytate.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sk/1ska_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ska ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Understanding of the atomic movements involved in an enzymatic reaction needs structural information on the active and inactive native enzyme molecules and on the enzyme-substrate, enzyme-intermediate, and enzyme-product(s) complexes. By using the X-ray crystallographic method, four crystal structures of Aspergillus fumigatus phytase were obtained at resolution higher than 1.7 A. The pH-dependent catalytic activity of A. fumigatus phytase was linked to three water molecules that may prevent the substrate from binding and thus block nucleophilic attack of the catalytic imidazole nitrogen. Comparison of various structures also identified the water molecule that attacks the phosphamide bond during the hydrolysis process, and established the hydrolysis pathway of the intermediate. Additionally, two reaction product phosphates were observed at the active site, suggesting a possible product release pathway after hydrolysis of the intermediate. These results can help explain the catalytic mechanism throughout the whole acid phosphatase family, as all key residues are conserved.
-
===Crystallographic snapshots of Aspergillus fumigatus phytase revealing its enzymatic dynamics===
+
Crystallographic snapshots of Aspergillus fumigatus phytase, revealing its enzymatic dynamics.,Liu Q, Huang Q, Lei XG, Hao Q Structure. 2004 Sep;12(9):1575-83. PMID:15341723<ref>PMID:15341723</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1ska" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_15341723}}, adds the Publication Abstract to the page
+
*[[Phytase 3D structures|Phytase 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15341723 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_15341723}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
1SKA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SKA OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:15341723</ref><references group="xtra"/>
+
-
[[Category: 3-phytase]]
+
[[Category: Aspergillus fumigatus]]
[[Category: Aspergillus fumigatus]]
-
[[Category: Hao, Q.]]
+
[[Category: Large Structures]]
-
[[Category: Huang, Q.]]
+
[[Category: Hao Q]]
-
[[Category: Lei, X G.]]
+
[[Category: Huang Q]]
-
[[Category: Liu, Q.]]
+
[[Category: Lei XG]]
-
[[Category: Big alpha/beta domain]]
+
[[Category: Liu Q]]
-
[[Category: Catalytic dynamic]]
+
-
[[Category: Catalytic site]]
+
-
[[Category: Product release pathway]]
+
-
[[Category: Small alpha domain]]
+
-
[[Category: Water structure]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:26:16 2009''
+

Current revision

Crystallographic snapshots of Aspergillus fumigatus phytase revealing its enzymatic dynamics

PDB ID 1ska

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ska"
Personal tools