2bqx

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(New page: 200px<br /><applet load="2bqx" size="450" color="white" frame="true" align="right" spinBox="true" caption="2bqx, resolution 1.90&Aring;" /> '''INORGANIC PYROPHOSPH...)
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[[Image:2bqx.jpg|left|200px]]<br /><applet load="2bqx" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2bqx, resolution 1.90&Aring;" />
 
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'''INORGANIC PYROPHOSPHATASE FROM THE PATHOGENIC BACTERIUM HELICOBACTER PYLORI-KINETIC AND STRUCTURAL PROPERTIES'''<br />
 
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==About this Structure==
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==Inorganic Pyrophosphatase from the Pathogenic Bacterium Helicobacter pylori-Kinetic and Structural Properties==
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2BQX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Active as [http://en.wikipedia.org/wiki/Inorganic_diphosphatase Inorganic diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.1 3.6.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2BQX OCA].
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<StructureSection load='2bqx' size='340' side='right'caption='[[2bqx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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[[Category: Helicobacter pylori]]
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== Structural highlights ==
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[[Category: Inorganic diphosphatase]]
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<table><tr><td colspan='2'>[[2bqx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BQX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BQX FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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[[Category: Chao, T.C.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bqx OCA], [https://pdbe.org/2bqx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bqx RCSB], [https://www.ebi.ac.uk/pdbsum/2bqx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bqx ProSAT]</span></td></tr>
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[[Category: Sun, Y.J.]]
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</table>
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[[Category: helicobacter pylori]]
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== Function ==
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[[Category: hydrolase]]
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[https://www.uniprot.org/uniprot/IPYR_HELPY IPYR_HELPY]
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[[Category: inorganic pyrophosphatase]]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/2bqx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bqx ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Inorganic pyrophosphatase (PPase) catalyzes the hydrolysis of pyrophosphate (PPi) to orthophosphate (Pi) and controls the level of PPi in cells. PPase plays an essential role in energy conservation and provides the energy for many biosynthetic pathways. The Helicobacter pylori pyrophosphatase (HpPPase) gene was cloned, expressed, purified, and found to have a molecular weight of 20 kDa. The K(m) and V (max) of HpPPase were determined as 214.4 microM and 594 micromol Pi min(-1) mg(-1), respectively. PPi binds Mg(2+) to form a true substrate that activates the enzyme. However, free PPi could be a potent inhibitor for HpPPase. The effects of the inhibitors NaF, ATP, iminodiphosphate, and N-ethylmaleimide on HpPPase activity were evaluated. NaF showed the highest inhibition of the enzyme. Crystal structures of HpPPase and the PPi-HpPPase complex were determined. HpPPase comprises three alpha-helices and nine beta-strands and folds as a barrel structure. HpPPase forms a hexamer in both the solution and crystal states, and each monomer has its own PPi-binding site. The PPi binding does not cause a significant conformational change in the PPi-HpPPase complex, which might represent an inhibition state for HpPPase in the absence of a divalent metal ion.
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 08:53:00 2007''
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Kinetic and structural properties of inorganic pyrophosphatase from the pathogenic bacterium Helicobacter pylori.,Chao TC, Huang H, Tsai JY, Huang CY, Sun YJ Proteins. 2006 Nov 15;65(3):670-80. PMID:16988955<ref>PMID:16988955</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2bqx" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Inorganic pyrophosphatase 3D structures|Inorganic pyrophosphatase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Helicobacter pylori 26695]]
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[[Category: Large Structures]]
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[[Category: Chao T-C]]
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[[Category: Sun Y-J]]

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Inorganic Pyrophosphatase from the Pathogenic Bacterium Helicobacter pylori-Kinetic and Structural Properties

PDB ID 2bqx

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