1u9m

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{{Seed}}
 
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[[Image:1u9m.png|left|200px]]
 
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==Crystal structure of F58W mutant of cytochrome b5==
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The line below this paragraph, containing "STRUCTURE_1u9m", creates the "Structure Box" on the page.
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<StructureSection load='1u9m' size='340' side='right'caption='[[1u9m]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1u9m]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U9M FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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{{STRUCTURE_1u9m| PDB=1u9m | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u9m OCA], [https://pdbe.org/1u9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u9m RCSB], [https://www.ebi.ac.uk/pdbsum/1u9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u9m ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYB5_BOVIN CYB5_BOVIN] Cytochrome b5 is a membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u9/1u9m_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u9m ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Phe58 of cytochrome b5 is involved in stacking interactions with heme and the axial ligand His63. To elucidate the contribution of the stacking interactions to protein stability, the crystal structures of the F58Y and F58W mutants were determined at high resolution. The structure of the F58Y mutant is basically the same as that of the wild-type protein. However, the mutation from Phe58 to Trp58 leads to difficulty in growing single crystals and results in a space-group change; the six molecules in the asymmetric unit form two groups that are related by a non-crystallographic twofold axis. The structure of F58W was determined using molecular replacement by making use of the non-crystallographic symmetry. The F58W mutation gives rise to multiple conformations of six side chains, a peptide linking two of the six residues and the extended propionic acid of the heme. The six molecules in the asymmetric unit of the F58W mutant structure are grouped into two types based on their conformations and one of the six molecules exhibits dual conformations. The stacking interactions are weakened owing to the increase/decrease of the angles between the indole ring of Trp58 and the His63/heme rings, which accounts for the lower stability of F58W compared with the wild-type protein.
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===Crystal structure of F58W mutant of cytochrome b5===
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Structure of the F58W mutant of cytochrome b5: the mutation leads to multiple conformations and weakens stacking interactions.,Shan L, Lu JX, Gan JH, Wang YH, Huang ZX, Xia ZX Acta Crystallogr D Biol Crystallogr. 2005 Feb;61(Pt 2):180-9. Epub 2005, Jan 19. PMID:15681869<ref>PMID:15681869</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1u9m" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_15681869}}, adds the Publication Abstract to the page
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*[[Cytochrome b5 3D structures|Cytochrome b5 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15681869 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15681869}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1U9M is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U9M OCA].
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==Reference==
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<ref group="xtra">PMID:15681869</ref><references group="xtra"/>
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[[Category: Bos taurus]]
[[Category: Bos taurus]]
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[[Category: Gan, J H.]]
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[[Category: Large Structures]]
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[[Category: Huang, Z X.]]
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[[Category: Gan J-H]]
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[[Category: Lu, J X.]]
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[[Category: Huang Z-X]]
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[[Category: Shan, L.]]
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[[Category: Lu J-X]]
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[[Category: Wang, Y H.]]
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[[Category: Shan L]]
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[[Category: Xia, Z X.]]
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[[Category: Wang Y-H]]
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[[Category: Aromatic-aromatic interaction]]
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[[Category: Xia Z-X]]
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[[Category: Conformational change]]
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[[Category: Crystal structure]]
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[[Category: F58y and f58w mutant]]
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[[Category: Hemoprotein]]
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[[Category: Structure-function relationship]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:15:31 2009''
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Current revision

Crystal structure of F58W mutant of cytochrome b5

PDB ID 1u9m

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