2pfz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pfz.png|left|200px]]
 
-
<!--
+
==Crystal structure of DctP6, a Bordetella pertussis extracytoplasmic solute receptor binding pyroglutamic acid==
-
The line below this paragraph, containing "STRUCTURE_2pfz", creates the "Structure Box" on the page.
+
<StructureSection load='2pfz' size='340' side='right'caption='[[2pfz]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pfz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis_Tohama_I Bordetella pertussis Tohama I]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PFZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PFZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-
{{STRUCTURE_2pfz| PDB=2pfz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pfz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pfz OCA], [https://pdbe.org/2pfz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pfz RCSB], [https://www.ebi.ac.uk/pdbsum/2pfz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pfz ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of DctP6, a Bordetella pertussis extracytoplasmic solute receptor binding pyroglutamic acid===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q7VXB3_BORPE Q7VXB3_BORPE]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17499270}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17499270 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pf/2pfz_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17499270}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2PFZ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PFZ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pfz ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:17499270</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Bordetella pertussis]]
+
[[Category: Bordetella pertussis Tohama I]]
-
[[Category: Rucktooa, P.]]
+
[[Category: Large Structures]]
-
[[Category: Extracytoplasmic solute receptor]]
+
[[Category: Rucktooa P]]
-
[[Category: Ligand binding]]
+
-
[[Category: Pyroglutamic acid]]
+
-
[[Category: Tripartite atp independent periplasmic transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:42:16 2009''
+

Current revision

Crystal structure of DctP6, a Bordetella pertussis extracytoplasmic solute receptor binding pyroglutamic acid

PDB ID 2pfz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pfz"
Personal tools