3d5o

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{{Seed}}
 
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[[Image:3d5o.png|left|200px]]
 
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==Structural recognition and functional activation of FcrR by innate pentraxins==
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The line below this paragraph, containing "STRUCTURE_3d5o", creates the "Structure Box" on the page.
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<StructureSection load='3d5o' size='340' side='right'caption='[[3d5o]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3d5o]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D5O FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3d5o| PDB=3d5o | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d5o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d5o OCA], [https://pdbe.org/3d5o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d5o RCSB], [https://www.ebi.ac.uk/pdbsum/3d5o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d5o ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/SAMP_HUMAN SAMP_HUMAN] Note=SAP is a precursor of amyloid component P which is found in basement membrane and associated with amyloid deposits.
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== Function ==
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[https://www.uniprot.org/uniprot/SAMP_HUMAN SAMP_HUMAN] Can interact with DNA and histones and may scavenge nuclear material released from damaged circulating cells. May also function as a calcium-dependent lectin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/3d5o_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d5o ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pentraxins are a family of ancient innate immune mediators conserved throughout evolution. The classical pentraxins include serum amyloid P component (SAP) and C-reactive protein, which are two of the acute-phase proteins synthesized in response to infection. Both recognize microbial pathogens and activate the classical complement pathway through C1q (refs 3 and 4). More recently, members of the pentraxin family were found to interact with cell-surface Fcgamma receptors (FcgammaR) and activate leukocyte-mediated phagocytosis. Here we describe the structural mechanism for pentraxin's binding to FcgammaR and its functional activation of FcgammaR-mediated phagocytosis and cytokine secretion. The complex structure between human SAP and FcgammaRIIa reveals a diagonally bound receptor on each SAP pentamer with both D1 and D2 domains of the receptor contacting the ridge helices from two SAP subunits. The 1:1 stoichiometry between SAP and FcgammaRIIa infers the requirement for multivalent pathogen binding for receptor aggregation. Mutational and binding studies show that pentraxins are diverse in their binding specificity for FcgammaR isoforms but conserved in their recognition structure. The shared binding site for SAP and IgG results in competition for FcgammaR binding and the inhibition of immune-complex-mediated phagocytosis by soluble pentraxins. These results establish antibody-like functions for pentraxins in the FcgammaR pathway, suggest an evolutionary overlap between the innate and adaptive immune systems, and have new therapeutic implications for autoimmune diseases.
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===Structural recognition and functional activation of FcrR by innate pentraxins===
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Structural recognition and functional activation of FcgammaR by innate pentraxins.,Lu J, Marnell LL, Marjon KD, Mold C, Du Clos TW, Sun PD Nature. 2008 Dec 18;456(7224):989-92. Epub 2008 Nov 16. PMID:19011614<ref>PMID:19011614</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3d5o" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Serum amyloid P-component|Serum amyloid P-component]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19011614 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19011614}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3D5O is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5O OCA].
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==Reference==
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<ref group="xtra">PMID:19011614</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Clos, T W.Du.]]
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[[Category: Large Structures]]
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[[Category: Lu, J.]]
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[[Category: Du Clos TW]]
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[[Category: Marjon, K D.]]
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[[Category: Lu J]]
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[[Category: Marnell, L L.]]
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[[Category: Marjon KD]]
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[[Category: Mold, C.]]
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[[Category: Marnell LL]]
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[[Category: Sun, P D.]]
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[[Category: Mold C]]
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[[Category: Amyloid]]
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[[Category: Sun PD]]
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[[Category: Calcium]]
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[[Category: Cell membrane]]
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[[Category: Complex structure]]
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[[Category: Fc receptor activation]]
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[[Category: Fc riia]]
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[[Category: Glycoprotein]]
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[[Category: Igg-binding protein]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin domain]]
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[[Category: Lectin]]
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[[Category: Membrane]]
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[[Category: Metal-binding]]
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[[Category: Pentraxin]]
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[[Category: Phosphoprotein]]
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[[Category: Polymorphism]]
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[[Category: Receptor]]
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[[Category: Sap]]
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[[Category: Secreted]]
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[[Category: Transmembrane]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:34:50 2009''
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Current revision

Structural recognition and functional activation of FcrR by innate pentraxins

PDB ID 3d5o

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