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2cyd

From Proteopedia

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(New page: 200px<br /><applet load="2cyd" size="450" color="white" frame="true" align="right" spinBox="true" caption="2cyd, resolution 2.80&Aring;" /> '''Crystal structure of...)
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[[Image:2cyd.gif|left|200px]]<br /><applet load="2cyd" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2cyd, resolution 2.80&Aring;" />
 
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'''Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae'''<br />
 
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==About this Structure==
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==Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae==
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2CYD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae] with LI, LHG and UMQ as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA].
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<StructureSection load='2cyd' size='340' side='right'caption='[[2cyd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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[[Category: Enterococcus hirae]]
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== Structural highlights ==
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[[Category: H(+)-transporting two-sector ATPase]]
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<table><tr><td colspan='2'>[[2cyd]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYD FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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[[Category: Kakinuma, Y.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=UMQ:UNDECYL-MALTOSIDE'>UMQ</scene></td></tr>
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[[Category: Murata, T.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyd OCA], [https://pdbe.org/2cyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyd RCSB], [https://www.ebi.ac.uk/pdbsum/2cyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyd ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyd TOPSAN]</span></td></tr>
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[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
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</table>
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[[Category: Shirouzu, M.]]
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== Function ==
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[[Category: Walker, J.E.]]
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[https://www.uniprot.org/uniprot/NTPK_ENTHA NTPK_ENTHA] Involved in ATP-driven sodium extrusion.
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[[Category: Yamato, I.]]
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== Evolutionary Conservation ==
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[[Category: Yokoyama, S.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: LHG]]
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Check<jmol>
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[[Category: LI]]
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<jmolCheckbox>
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[[Category: UMQ]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyd_consurf.spt"</scriptWhenChecked>
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[[Category: enterococcus]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: lithium]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: na(+)-atpase]]
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</jmolCheckbox>
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[[Category: national project on protein structural and functional analyses]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cyd ConSurf].
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[[Category: nppsfa]]
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<div style="clear:both"></div>
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[[Category: ntpk]]
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[[Category: proteolipid]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: structural genomics]]
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[[Category: v-atpase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:20:39 2007''
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==See Also==
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*[[ATPase 3D structures|ATPase 3D structures]]
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__TOC__
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</StructureSection>
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[[Category: Enterococcus hirae]]
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[[Category: Large Structures]]
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[[Category: Kakinuma Y]]
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[[Category: Murata T]]
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[[Category: Shirouzu M]]
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[[Category: Walker JE]]
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[[Category: Yamato I]]
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[[Category: Yokoyama S]]

Current revision

Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae

PDB ID 2cyd

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