We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1k3f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1k3f.png|left|200px]]
 
-
<!--
+
==Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice==
-
The line below this paragraph, containing "STRUCTURE_1k3f", creates the "Structure Box" on the page.
+
<StructureSection load='1k3f' size='340' side='right'caption='[[1k3f]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1k3f]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K3F FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k3f OCA], [https://pdbe.org/1k3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k3f RCSB], [https://www.ebi.ac.uk/pdbsum/1k3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k3f ProSAT]</span></td></tr>
-
{{STRUCTURE_1k3f| PDB=1k3f | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UDP_ECOLI UDP_ECOLI] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/1k3f_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k3f ConSurf].
 +
<div style="clear:both"></div>
-
===Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice===
+
==See Also==
-
 
+
*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_7796917}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 7796917 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_7796917}}
+
-
 
+
-
==About this Structure==
+
-
1K3F is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K3F OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:7796917</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Uridine phosphorylase]]
+
[[Category: Large Structures]]
-
[[Category: Armstrong, S R.]]
+
[[Category: Armstrong SR]]
-
[[Category: Blagova, E V.]]
+
[[Category: Blagova EV]]
-
[[Category: Burlakova, A A.]]
+
[[Category: Burlakova AA]]
-
[[Category: Debabov, V G.]]
+
[[Category: Debabov VG]]
-
[[Category: Ealick, S E.]]
+
[[Category: Ealick SE]]
-
[[Category: Komissarov, A A.]]
+
[[Category: Komissarov AA]]
-
[[Category: Linkova, E V.]]
+
[[Category: Linkova EV]]
-
[[Category: Mao, C.]]
+
[[Category: Mao C]]
-
[[Category: Mikhailov, A M.]]
+
[[Category: Mikhailov AM]]
-
[[Category: Mironov, A S.]]
+
[[Category: Mironov AS]]
-
[[Category: Morgunova, E Yu.]]
+
[[Category: Morgunova EYu]]
-
[[Category: Popov, A N.]]
+
[[Category: Popov AN]]
-
[[Category: Smirnova, E A.]]
+
[[Category: Smirnova EA]]
-
[[Category: Vainshtein, B K.]]
+
[[Category: Vainshtein BK]]
-
[[Category: Hexamer]]
+
-
[[Category: Nucleoside phosphorylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:59:43 2009''
+

Current revision

Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice

PDB ID 1k3f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools