2vqa
From Proteopedia
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- | {{Seed}} | ||
- | [[Image:2vqa.png|left|200px]] | ||
- | < | + | ==Protein-folding location can regulate Mn versus Cu- or Zn-binding. Crystal Structure of MncA.== |
- | + | <StructureSection load='2vqa' size='340' side='right'caption='[[2vqa]], [[Resolution|resolution]] 2.95Å' scene=''> | |
- | You may | + | == Structural highlights == |
- | + | <table><tr><td colspan='2'>[[2vqa]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VQA FirstGlance]. <br> | |
- | or | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.95Å</td></tr> |
- | - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vqa OCA], [https://pdbe.org/2vqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vqa RCSB], [https://www.ebi.ac.uk/pdbsum/2vqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vqa ProSAT]</span></td></tr> | |
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/P73510_SYNY3 P73510_SYNY3] | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vq/2vqa_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vqa ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Metals are needed by at least one-quarter of all proteins. Although metallochaperones insert the correct metal into some proteins, they have not been found for the vast majority, and the view is that most metalloproteins acquire their metals directly from cellular pools. However, some metals form more stable complexes with proteins than do others. For instance, as described in the Irving-Williams series, Cu(2+) and Zn(2+) typically form more stable complexes than Mn(2+). Thus it is unclear what cellular mechanisms manage metal acquisition by most nascent proteins. To investigate this question, we identified the most abundant Cu(2+)-protein, CucA (Cu(2+)-cupin A), and the most abundant Mn(2+)-protein, MncA (Mn(2+)-cupin A), in the periplasm of the cyanobacterium Synechocystis PCC 6803. Each of these newly identified proteins binds its respective metal via identical ligands within a cupin fold. Consistent with the Irving-Williams series, MncA only binds Mn(2+) after folding in solutions containing at least a 10(4) times molar excess of Mn(2+) over Cu(2+) or Zn(2+). However once MncA has bound Mn(2+), the metal does not exchange with Cu(2+). MncA and CucA have signal peptides for different export pathways into the periplasm, Tat and Sec respectively. Export by the Tat pathway allows MncA to fold in the cytoplasm, which contains only tightly bound copper or Zn(2+) (refs 10-12) but micromolar Mn(2+) (ref. 13). In contrast, CucA folds in the periplasm to acquire Cu(2+). These results reveal a mechanism whereby the compartment in which a protein folds overrides its binding preference to control its metal content. They explain why the cytoplasm must contain only tightly bound and buffered copper and Zn(2+). | ||
- | + | Protein-folding location can regulate manganese-binding versus copper- or zinc-binding.,Tottey S, Waldron KJ, Firbank SJ, Reale B, Bessant C, Sato K, Cheek TR, Gray J, Banfield MJ, Dennison C, Robinson NJ Nature. 2008 Oct 23;455(7216):1138-42. PMID:18948958<ref>PMID:18948958</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | == | + | </div> |
- | + | <div class="pdbe-citations 2vqa" style="background-color:#fffaf0;"></div> | |
- | [[Category: Synechocystis sp.]] | + | == References == |
- | [[Category: Banfield | + | <references/> |
- | [[Category: Bessant | + | __TOC__ |
- | [[Category: Dennison | + | </StructureSection> |
- | [[Category: Firbank | + | [[Category: Large Structures]] |
- | [[Category: Gray | + | [[Category: Synechocystis sp. PCC 6803]] |
- | [[Category: Reale | + | [[Category: Banfield MJ]] |
- | [[Category: Robinson | + | [[Category: Bessant C]] |
- | [[Category: Sato | + | [[Category: Dennison C]] |
- | [[Category: Tottey | + | [[Category: Firbank SJ]] |
- | [[Category: Waldron | + | [[Category: Gray J]] |
- | + | [[Category: Reale B]] | |
- | + | [[Category: Robinson NJ]] | |
- | + | [[Category: Sato K]] | |
- | + | [[Category: Tottey S]] | |
- | + | [[Category: Waldron KJ]] | |
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Current revision
Protein-folding location can regulate Mn versus Cu- or Zn-binding. Crystal Structure of MncA.
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Categories: Large Structures | Synechocystis sp. PCC 6803 | Banfield MJ | Bessant C | Dennison C | Firbank SJ | Gray J | Reale B | Robinson NJ | Sato K | Tottey S | Waldron KJ