This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ikd
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:2ikd.png|left|200px]] | ||
| - | + | ==Solution Structure of the first Clip domain in PAP2== | |
| - | + | <StructureSection load='2ikd' size='340' side='right'caption='[[2ikd]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2ikd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carolina_sphinx Carolina sphinx]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2IKD FirstGlance]. <br> | |
| - | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ike|2ike]]</td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAP-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7130 Carolina sphinx])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ikd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikd OCA], [http://pdbe.org/2ikd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ikd RCSB], [http://www.ebi.ac.uk/pdbsum/2ikd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ikd ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ikd_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Dai, H E | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Huang, R D | + | </jmolCheckbox> |
| - | [[Category: Jiang, H B | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ikd ConSurf]. |
| - | [[Category: Lv, Z Q | + | <div style="clear:both"></div> |
| - | [[Category: Prakash, O | + | __TOC__ |
| - | [[Category: Velde, D V | + | </StructureSection> |
| + | [[Category: Carolina sphinx]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Dai, H E]] | ||
| + | [[Category: Huang, R D]] | ||
| + | [[Category: Jiang, H B]] | ||
| + | [[Category: Lv, Z Q]] | ||
| + | [[Category: Prakash, O]] | ||
| + | [[Category: Velde, D V]] | ||
[[Category: Beta-sheet]] | [[Category: Beta-sheet]] | ||
[[Category: Double helix]] | [[Category: Double helix]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:23:57 2009'' | ||
Current revision
Solution Structure of the first Clip domain in PAP2
| |||||||||||
Categories: Carolina sphinx | Large Structures | Dai, H E | Huang, R D | Jiang, H B | Lv, Z Q | Prakash, O | Velde, D V | Beta-sheet | Double helix | Hydrolase
