1o8t

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{{Seed}}
 
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[[Image:1o8t.png|left|200px]]
 
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==Global Structure and Dynamics of Human Apolipoprotein CII in Complex with Micelles: Evidence for increased mobility of the helix involved in the activation of lipoprotein lipase==
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The line below this paragraph, containing "STRUCTURE_1o8t", creates the "Structure Box" on the page.
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<StructureSection load='1o8t' size='340' side='right'caption='[[1o8t]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1o8t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O8T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O8T FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o8t OCA], [https://pdbe.org/1o8t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o8t RCSB], [https://www.ebi.ac.uk/pdbsum/1o8t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o8t ProSAT]</span></td></tr>
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{{STRUCTURE_1o8t| PDB=1o8t | SCENE= }}
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/APOC2_HUMAN APOC2_HUMAN] Defects in APOC2 are the cause of hyperlipoproteinemia type 1B (HLPP1B) [MIM:[https://omim.org/entry/207750 207750]. It is an autosomal recessive trait characterized by hypertriglyceridemia, xanthomas, and increased risk of pancreatitis and early atherosclerosis.<ref>PMID:8323539</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/APOC2_HUMAN APOC2_HUMAN] Component of the very low density lipoprotein (VLDL) fraction in plasma, and is an activator of several triacylglycerol lipases. The association of APOC2 with plasma chylomicrons, VLDL, and HDL is reversible, a function of the secretion and catabolism of triglyceride-rich lipoproteins, and changes rapidly.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/1o8t_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o8t ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Apolipoprotein CII (apoCII), a surface constituent of plasma lipoproteins, is the activator for lipoprotein lipase (LPL) and is therefore central for lipid transport in blood. The three-dimensional structure of (13)C-, (15)N-enriched human full-length apoCII in complex with sodium dodecyl sulfate (SDS) micelles is reported. In addition to the structure determination, (15)N-relaxation measurements have been performed at two magnetic fields to characterize the dynamics of the backbone of apoCII in the complex. The relaxation data also provided global structural constraints, viz. the orientation of helices in the complex. In addition, global constraints were derived from the fact that apoCII helices are attached to the surface of the SDS micelle and that the hydrophobic moments of each helix faces the interior of the micelle. These three categories of global constraints, together with the local classical NMR constraints, were sufficient to define the 3D structure of the apoCII-SDS micelle complex. To our knowledge, this presents the first example in which the global structure of a protein-SDS micelle complex has been determined. The C-terminal helix of apoCII is known to be responsible for the activation of LPL. This helix is distinguished from the other helices by a higher degree of internal motion on the nanosecond time scale as shown by the relaxation data. The overall structure and the internal dynamics, combined with previous mutation data, give important clues toward a possible mechanism for the activation of LPL by apoCII.
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===GLOBAL STRUCTURE AND DYNAMICS OF HUMAN APOLIPOPROTEIN CII IN COMPLEX WITH MICELLES: EVIDENCE FOR INCREASED MOBILITY OF THE HELIX INVOLVVED IN THE ACTIVATION OF LIPOPROTEIN LIPASE.===
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Global structure and dynamics of human apolipoprotein CII in complex with micelles: evidence for increased mobility of the helix involved in the activation of lipoprotein lipase.,Zdunek J, Martinez GV, Schleucher J, Lycksell PO, Yin Y, Nilsson S, Shen Y, Olivecrona G, Wijmenga S Biochemistry. 2003 Feb 25;42(7):1872-89. PMID:12590574<ref>PMID:12590574</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_12590574}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1o8t" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 12590574 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12590574}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1O8T is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O8T OCA].
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==Reference==
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<ref group="xtra">PMID:12590574</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Lycksell, P O.]]
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[[Category: Large Structures]]
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[[Category: Martinez, G V.]]
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[[Category: Lycksell PO]]
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[[Category: Nilsson, S.]]
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[[Category: Martinez GV]]
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[[Category: Olivecrona, G.]]
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[[Category: Nilsson S]]
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[[Category: Schleucher, J.]]
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[[Category: Olivecrona G]]
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[[Category: Shen, Y.]]
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[[Category: Schleucher J]]
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[[Category: Wijmenga, S.]]
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[[Category: Shen Y]]
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[[Category: Yin, Y.]]
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[[Category: Wijmenga S]]
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[[Category: Zdunek, J.]]
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[[Category: Yin Y]]
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[[Category: Activation mechanism]]
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[[Category: Zdunek J]]
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[[Category: Apocii]]
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[[Category: Chylomicron]]
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[[Category: Domain motion]]
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[[Category: Dynamic]]
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[[Category: Global structure]]
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[[Category: Helix ,lipid transport,lipid degradation]]
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[[Category: Local structure]]
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[[Category: Lpl]]
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[[Category: Micelle]]
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[[Category: Sd]]
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[[Category: Structure]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:40:24 2009''
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Current revision

Global Structure and Dynamics of Human Apolipoprotein CII in Complex with Micelles: Evidence for increased mobility of the helix involved in the activation of lipoprotein lipase

PDB ID 1o8t

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