2ddb

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(New page: 200px<br /><applet load="2ddb" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ddb, resolution 1.900&Aring;" /> '''Crystal structure o...)
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[[Image:2ddb.jpg|left|200px]]<br /><applet load="2ddb" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ddb, resolution 1.900&Aring;" />
 
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'''Crystal structure of pseudecin from Pseudechis porphyriacus'''<br />
 
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==About this Structure==
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==Crystal structure of pseudecin from Pseudechis porphyriacus==
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2DDB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudechis_porphyriacus Pseudechis porphyriacus] with NA, FMT and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2DDB OCA].
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<StructureSection load='2ddb' size='340' side='right'caption='[[2ddb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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[[Category: Pseudechis porphyriacus]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2ddb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudechis_porphyriacus Pseudechis porphyriacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DDB FirstGlance]. <br>
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[[Category: Fujimoto, Z.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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[[Category: Mizuno, H.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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[[Category: Morita, T.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ddb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ddb OCA], [https://pdbe.org/2ddb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ddb RCSB], [https://www.ebi.ac.uk/pdbsum/2ddb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ddb ProSAT]</span></td></tr>
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[[Category: Suzuki, N.]]
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</table>
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[[Category: Yamazaki, Y.]]
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== Function ==
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[[Category: FMT]]
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[https://www.uniprot.org/uniprot/CRVP_PSEPO CRVP_PSEPO] Blocks olfactory (CNGA2) and retinal (CNGA1) CNG channel currents. Is really less potent that Pseudechetoxin. Does not affect neither depolarization- nor caffeine-induced contraction of smooth muscle.<ref>PMID:12234174</ref>
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[[Category: GOL]]
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== Evolutionary Conservation ==
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[[Category: NA]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: cng channel]]
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Check<jmol>
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[[Category: crisp]]
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<jmolCheckbox>
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[[Category: snake venom]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/2ddb_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ddb ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cyclic nucleotide-gated (CNG) ion channels play pivotal roles in sensory transduction by retinal photoreceptors and olfactory neurons. The elapid snake toxins pseudechetoxin (PsTx) and pseudecin (Pdc) are the only known protein blockers of CNG channels. These toxins belong to a cysteine-rich secretory protein (CRISP) family containing an N-terminal pathogenesis-related proteins of group 1 (PR-1) domain and a C-terminal cysteine-rich domain (CRD). PsTx and Pdc are highly homologous proteins, but their blocking affinities on CNG channels are different: PsTx blocks both the olfactory and retinal channels with approximately 15-30-fold higher affinity than Pdc. To gain further insights into their structure and function, the crystal structures of PsTx, Pdc and Zn2+-bound Pdc were determined. The structures revealed that most of the amino-acid-residue differences between PsTx and Pdc are located around the concave surface formed between the PR-1 domain and the CRD, suggesting that the concave surface is functionally important for CNG-channel binding and inhibition. A structural comparison in the presence and absence of Zn2+ ion demonstrated that the concave surface can open and close owing to movement of the CRD upon Zn2+ binding. The data suggest that PsTx and Pdc occlude the pore entrance and that the dynamic motion of the concave surface facilitates interaction with the CNG channels.
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:33:01 2007''
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Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain.,Suzuki N, Yamazaki Y, Brown RL, Fujimoto Z, Morita T, Mizuno H Acta Crystallogr D Biol Crystallogr. 2008 Oct;64(Pt 10):1034-42. Epub 2008, Sep 19. PMID:18931410<ref>PMID:18931410</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2ddb" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Pseudechetoxin|Pseudechetoxin]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pseudechis porphyriacus]]
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[[Category: Fujimoto Z]]
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[[Category: Mizuno H]]
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[[Category: Morita T]]
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[[Category: Suzuki N]]
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[[Category: Yamazaki Y]]

Current revision

Crystal structure of pseudecin from Pseudechis porphyriacus

PDB ID 2ddb

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