This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rd2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:21, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2rd2.png|left|200px]]
 
-
<!--
+
==Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE==
-
The line below this paragraph, containing "STRUCTURE_2rd2", creates the "Structure Box" on the page.
+
<StructureSection load='2rd2' size='340' side='right'caption='[[2rd2]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2rd2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RD2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RD2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=QSI:5-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE'>QSI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2rd2| PDB=2rd2 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rd2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rd2 OCA], [https://pdbe.org/2rd2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rd2 RCSB], [https://www.ebi.ac.uk/pdbsum/2rd2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rd2 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYQ_ECOLI SYQ_ECOLI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rd2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rd2 ConSurf].
 +
<div style="clear:both"></div>
-
===Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18477696}}, adds the Publication Abstract to the page
+
[[Category: Escherichia coli]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 18477696 is the PubMed ID number.
+
[[Category: Escherichia coli K-12]]
-
-->
+
[[Category: Large Structures]]
-
{{ABSTRACT_PUBMED_18477696}}
+
[[Category: Bullock TL]]
-
 
+
[[Category: Perona JJ]]
-
==About this Structure==
+
-
2RD2 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RD2 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:18477696</ref><references group="xtra"/>
+
-
[[Category: Escherichia coli k12]]
+
-
[[Category: Glutamine--tRNA ligase]]
+
-
[[Category: Bullock, T L.]]
+
-
[[Category: Perona, J J.]]
+
-
[[Category: Aminoacyl-trna synthetase]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Cytoplasm]]
+
-
[[Category: Ligase]]
+
-
[[Category: Ligase/rna complex]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Protein biosynthesis]]
+
-
[[Category: Protein-rna complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 13:28:24 2009''
+

Current revision

Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE

PDB ID 2rd2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools