This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dm7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2dm7" size="450" color="white" frame="true" align="right" spinBox="true" caption="2dm7" /> '''Solution structure of the 14th Ig-like domai...)
Current revision (18:43, 29 May 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dm7.gif|left|200px]]<br /><applet load="2dm7" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2dm7" />
 
-
'''Solution structure of the 14th Ig-like domain of human KIAA1556 protein'''<br />
 
-
==About this Structure==
+
==Solution structure of the 14th Ig-like domain of human KIAA1556 protein==
-
2DM7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2DM7 OCA].
+
<StructureSection load='2dm7' size='340' side='right'caption='[[2dm7]]' scene=''>
-
[[Category: Homo sapiens]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2dm7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DM7 FirstGlance]. <br>
-
[[Category: Hayashi, F.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
[[Category: Kurosaki, C.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dm7 OCA], [https://pdbe.org/2dm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dm7 RCSB], [https://www.ebi.ac.uk/pdbsum/2dm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dm7 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dm7 TOPSAN]</span></td></tr>
-
[[Category: Nagashima, K.]]
+
</table>
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
== Function ==
-
[[Category: Yokoyama, S.]]
+
[https://www.uniprot.org/uniprot/OBSCN_HUMAN OBSCN_HUMAN] Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.<ref>PMID:11448995</ref> <ref>PMID:16205939</ref>
-
[[Category: Yoshida, M.]]
+
== Evolutionary Conservation ==
-
[[Category: beta-sandwich]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: ig-fold]]
+
Check<jmol>
-
[[Category: national project on protein structural and functional analyses]]
+
<jmolCheckbox>
-
[[Category: nppsfa]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/2dm7_consurf.spt"</scriptWhenChecked>
-
[[Category: obscurin]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: rsgi]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dm7 ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:40:04 2007''
+
==See Also==
 +
*[[Obscurin|Obscurin]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Hayashi F]]
 +
[[Category: Kurosaki C]]
 +
[[Category: Nagashima K]]
 +
[[Category: Yokoyama S]]
 +
[[Category: Yoshida M]]
 +
[[Category: Z-disk]]

Current revision

Solution structure of the 14th Ig-like domain of human KIAA1556 protein

PDB ID 2dm7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools