2e5w
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2e5w" size="450" color="white" frame="true" align="right" spinBox="true" caption="2e5w, resolution 2.00Å" /> '''Crystal structure of...) |
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| - | [[Image:2e5w.gif|left|200px]]<br /><applet load="2e5w" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2e5w, resolution 2.00Å" /> | ||
| - | '''Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3'''<br /> | ||
| - | == | + | ==Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3== |
| - | + | <StructureSection load='2e5w' size='340' side='right'caption='[[2e5w]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | [ | + | <table><tr><td colspan='2'>[[2e5w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E5W FirstGlance]. <br> |
| - | [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene>, <scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e5w OCA], [https://pdbe.org/2e5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e5w RCSB], [https://www.ebi.ac.uk/pdbsum/2e5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e5w ProSAT], [https://www.topsan.org/Proteins/RSGI/2e5w TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Function == |
| - | + | [https://www.uniprot.org/uniprot/SPEE_PYRHO SPEE_PYRHO] Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine (By similarity).[HAMAP-Rule:MF_00198] | |
| - | [[ | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | [ | + | <jmolCheckbox> |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/2e5w_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e5w ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Spermidine synthase 3D structures|Spermidine synthase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Pyrococcus horikoshii OT3]] | ||
| + | [[Category: Kunishima N]] | ||
| + | [[Category: Mizutani H]] | ||
Current revision
Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3
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