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2ear

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(New page: 200px<br /><applet load="2ear" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ear, resolution 3.10&Aring;" /> '''P21 crystal of the S...)
Current revision (07:52, 23 October 2024) (edit) (undo)
 
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[[Image:2ear.gif|left|200px]]<br /><applet load="2ear" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ear, resolution 3.10&Aring;" />
 
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'''P21 crystal of the SR CA2+-ATPase with bound TG'''<br />
 
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==Overview==
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==P21 crystal of the SR CA2+-ATPase with bound TG==
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Ca(2+)-ATPase of skeletal muscle sarcoplasmic reticulum is an ATP-driven, Ca(2+) pump consisting of three cytoplasmic domains and 10 transmembrane, helices. In the absence of Ca(2+), the three cytoplasmic domains gather to, form a compact headpiece, but the ATPase is unstable without an inhibitor., Here we describe the crystal structures of Ca(2+)-ATPase in the absence of, Ca(2+) stabilized with cyclopiazonic acid alone and in combination with, other inhibitors. Cyclopiazonic acid is located in the transmembrane, region of the protein near the cytoplasmic surface. The binding site, partially overlaps with that of 2,5-di-tert-butyl-1,4-dihydroxybenzene but, is separate from that of thapsigargin. The overall structure is, significantly different from that stabilized with thapsigargin: The, cytoplasmic headpiece is more upright, and the transmembrane helices M1-M4, are rearranged. Cyclopiazonic acid primarily alters the position of the, M1' helix and thereby M2 and M4 and then M5. Because M5 is integrated into, the phosphorylation domain, the whole cytoplasmic headpiece moves. These, structural changes show how an event in the transmembrane domain can be, transmitted to the cytoplasmic domain despite flexible links between them., They also reveal that Ca(2+)-ATPase has considerable plasticity even when, fixed by a transmembrane inhibitor, presumably to accommodate thermal, fluctuations.
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<StructureSection load='2ear' size='340' side='right'caption='[[2ear]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ear]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EAR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EAR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=TG1:[(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-acetyloxy-4-butanoyloxy-3,3a-dihydroxy-3,6,9-trimethyl-8-[(Z)-2-methylbut-2-enoyl]oxy-2-oxo-4,5,6a,7,8,9b-hexahydroazuleno[4,5-b]furan-7-yl]+octanoate'>TG1</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ear FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ear OCA], [https://pdbe.org/2ear PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ear RCSB], [https://www.ebi.ac.uk/pdbsum/2ear PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ear ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AT2A1_RABIT AT2A1_RABIT] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ea/2ear_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ear ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ca(2+)-ATPase of skeletal muscle sarcoplasmic reticulum is an ATP-driven Ca(2+) pump consisting of three cytoplasmic domains and 10 transmembrane helices. In the absence of Ca(2+), the three cytoplasmic domains gather to form a compact headpiece, but the ATPase is unstable without an inhibitor. Here we describe the crystal structures of Ca(2+)-ATPase in the absence of Ca(2+) stabilized with cyclopiazonic acid alone and in combination with other inhibitors. Cyclopiazonic acid is located in the transmembrane region of the protein near the cytoplasmic surface. The binding site partially overlaps with that of 2,5-di-tert-butyl-1,4-dihydroxybenzene but is separate from that of thapsigargin. The overall structure is significantly different from that stabilized with thapsigargin: The cytoplasmic headpiece is more upright, and the transmembrane helices M1-M4 are rearranged. Cyclopiazonic acid primarily alters the position of the M1' helix and thereby M2 and M4 and then M5. Because M5 is integrated into the phosphorylation domain, the whole cytoplasmic headpiece moves. These structural changes show how an event in the transmembrane domain can be transmitted to the cytoplasmic domain despite flexible links between them. They also reveal that Ca(2+)-ATPase has considerable plasticity even when fixed by a transmembrane inhibitor, presumably to accommodate thermal fluctuations.
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==About this Structure==
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Interdomain communication in calcium pump as revealed in the crystal structures with transmembrane inhibitors.,Takahashi M, Kondou Y, Toyoshima C Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5800-5. Epub 2007 Mar 26. PMID:17389383<ref>PMID:17389383</ref>
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2EAR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus] with TG1 as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Calcium-transporting_ATPase Calcium-transporting ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.8 3.6.3.8] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2EAR OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Interdomain communication in calcium pump as revealed in the crystal structures with transmembrane inhibitors., Takahashi M, Kondou Y, Toyoshima C, Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5800-5. Epub 2007 Mar 26. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17389383 17389383]
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</div>
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[[Category: Calcium-transporting ATPase]]
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<div class="pdbe-citations 2ear" style="background-color:#fffaf0;"></div>
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[[Category: Oryctolagus cuniculus]]
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[[Category: Single protein]]
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[[Category: Kondou, Y.]]
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[[Category: Takahashi, M.]]
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[[Category: Toyoshima, C.]]
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[[Category: TG1]]
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[[Category: ca2+]]
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[[Category: had fold]]
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[[Category: ion pump]]
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[[Category: membrane protein]]
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[[Category: p-type atpase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:00:05 2007''
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==See Also==
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*[[ATPase 3D structures|ATPase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Oryctolagus cuniculus]]
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[[Category: Kondou Y]]
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[[Category: Takahashi M]]
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[[Category: Toyoshima C]]

Current revision

P21 crystal of the SR CA2+-ATPase with bound TG

PDB ID 2ear

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