3dba

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:40, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dba.png|left|200px]]
 
-
<!--
+
==Crystal structure of the cGMP-bound GAF a domain from the photoreceptor phosphodiesterase 6C==
-
The line below this paragraph, containing "STRUCTURE_3dba", creates the "Structure Box" on the page.
+
<StructureSection load='3dba' size='340' side='right'caption='[[3dba]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dba]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DBA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.57&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=35G:GUANOSINE-3,5-MONOPHOSPHATE'>35G</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_3dba| PDB=3dba | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dba OCA], [https://pdbe.org/3dba PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dba RCSB], [https://www.ebi.ac.uk/pdbsum/3dba PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dba ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PDE6C_CHICK PDE6C_CHICK]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dba_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dba ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of the cGMP-bound GAF a domain from the photoreceptor phosphodiesterase 6C===
+
==See Also==
-
 
+
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18614542}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 18614542 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_18614542}}
+
-
 
+
-
==About this Structure==
+
-
3DBA is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBA OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:18614542</ref><references group="xtra"/>
+
-
[[Category: 3',5'-cyclic-GMP phosphodiesterase]]
+
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Beavo, J A.]]
+
[[Category: Large Structures]]
-
[[Category: Heikaus, C C.]]
+
[[Category: Beavo JA]]
-
[[Category: Klevit, R E.]]
+
[[Category: Heikaus CC]]
-
[[Category: Martinez, S E.]]
+
[[Category: Klevit RE]]
-
[[Category: 3s']]
+
[[Category: Martinez SE]]
-
[[Category: 5' cgmp]]
+
-
[[Category: Cgmp]]
+
-
[[Category: Cyclic nucleotide phosphodiesterase]]
+
-
[[Category: Gaf domain]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Lipoprotein]]
+
-
[[Category: Membrane]]
+
-
[[Category: Prenylation]]
+
-
[[Category: Sensory transduction]]
+
-
[[Category: Vision]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:25:04 2009''
+

Current revision

Crystal structure of the cGMP-bound GAF a domain from the photoreceptor phosphodiesterase 6C

PDB ID 3dba

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dba"
Personal tools