2r0h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:02, 25 October 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2r0h.png|left|200px]]
 
-
<!--
+
==Fungal lectin CGL3 in complex with chitotriose (chitotetraose)==
-
The line below this paragraph, containing "STRUCTURE_2r0h", creates the "Structure Box" on the page.
+
<StructureSection load='2r0h' size='340' side='right'caption='[[2r0h]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2r0h]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R0H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R0H FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900017:triacetyl-beta-chitotriose'>PRD_900017</scene></td></tr>
-
{{STRUCTURE_2r0h| PDB=2r0h | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r0h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r0h OCA], [https://pdbe.org/2r0h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r0h RCSB], [https://www.ebi.ac.uk/pdbsum/2r0h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r0h ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CGL3_COPCI CGL3_COPCI] Binds complex carbohydrates, such as chitooligosaccharides. Does not bind lactose. May play a role in fruiting body formation.<ref>PMID:18440554</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/2r0h_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r0h ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Recent advances in genome sequencing efforts have revealed an abundance of novel putative lectins. Among these, many galectin-related proteins, characterized by many conserved residues but intriguingly lacking critical amino acids, have been found in all corners of the eukaryotic superkingdom. Here we present a structural and biochemical analysis of one representative, the galectin-related lectin CGL3 found in the inky cap mushroom Coprinopsis cinerea. This protein contains all but one conserved residues known to be involved in beta-galactoside binding in galectins. A Trp residue strictly conserved among galectins is changed to an Arg in CGL3 (R81). Accordingly, the galectin-related protein is not able to bind lactose. Screening of a glycan array revealed that CGL3 displays preference for oligomers of beta1-4-linked N-acetyl-glucosamines (chitooligosaccharides) and GalNAc beta 1-4GlcNAc (LacdiNAc). Carbohydrate-binding affinity of this novel lectin was quantified using isothermal titration calorimetry, and its mode of chitooligosaccharide coordination not involving any aromatic amino acid residues was studied by X-ray crystallography. Structural information was used to alter the carbohydrate-binding specificity and substrate affinity of CGL3. The importance of residue R81 in determining the carbohydrate-binding specificity was demonstrated by replacing this Arg with a Trp residue (R81W). This single-amino-acid change led to a lectin that failed to bind chitooligosaccharides but gained lactose binding. Our results demonstrate that, similar to the legume lectin fold, the galectin fold represents a conserved structural framework upon which dramatically altered specificities can be grafted by few alterations in the binding site and that, in consequence, many metazoan galectin-related proteins may represent lectins with novel carbohydrate-binding specificities.
-
===Fungal lectin CGL3 in complex with chitotriose (chitotetraose)===
+
Structural basis for chitotetraose coordination by CGL3, a novel galectin-related protein from Coprinopsis cinerea.,Walti MA, Walser PJ, Thore S, Grunler A, Bednar M, Kunzler M, Aebi M J Mol Biol. 2008 May 23;379(1):146-59. Epub 2008 Apr 3. PMID:18440554<ref>PMID:18440554</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18440554}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2r0h" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18440554 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18440554}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2R0H is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R0H OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:18440554</ref><references group="xtra"/>
+
[[Category: Coprinopsis cinerea]]
[[Category: Coprinopsis cinerea]]
-
[[Category: Aebi, M.]]
+
[[Category: Large Structures]]
-
[[Category: Ban, N.]]
+
[[Category: Aebi M]]
-
[[Category: Gruenler, A.]]
+
[[Category: Ban N]]
-
[[Category: Kuenzler, M.]]
+
[[Category: Gruenler A]]
-
[[Category: Thore, S.]]
+
[[Category: Kuenzler M]]
-
[[Category: Waelti, M A.]]
+
[[Category: Thore S]]
-
[[Category: Walser, P J.]]
+
[[Category: Waelti MA]]
-
[[Category: Chitooligosaccharide]]
+
[[Category: Walser PJ]]
-
[[Category: Chitotriose]]
+
-
[[Category: Galectin-related]]
+
-
[[Category: Lectin]]
+
-
[[Category: Sugar binding protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:31:53 2009''
+

Current revision

Fungal lectin CGL3 in complex with chitotriose (chitotetraose)

PDB ID 2r0h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools