This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r80

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:03, 25 October 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2r80.png|left|200px]]
 
-
<!--
+
==Pigeon Hemoglobin (OXY form)==
-
The line below this paragraph, containing "STRUCTURE_2r80", creates the "Structure Box" on the page.
+
<StructureSection load='2r80' size='340' side='right'caption='[[2r80]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2r80]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Columba_livia Columba livia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R80 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R80 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.44&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-
{{STRUCTURE_2r80| PDB=2r80 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r80 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r80 OCA], [https://pdbe.org/2r80 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r80 RCSB], [https://www.ebi.ac.uk/pdbsum/2r80 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r80 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HBA_COLLI HBA_COLLI] Involved in oxygen transport from the lung to the various peripheral tissues.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r80_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r80 ConSurf].
 +
<div style="clear:both"></div>
-
===Pigeon Hemoglobin (OXY form)===
+
==See Also==
-
 
+
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2R80 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Columba_livia Columba livia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R80 OCA].
+
[[Category: Columba livia]]
[[Category: Columba livia]]
-
[[Category: Charles, P.]]
+
[[Category: Large Structures]]
-
[[Category: Heinemann, U.]]
+
[[Category: Heinemann U]]
-
[[Category: Muller, J J.]]
+
[[Category: Muller JJ]]
-
[[Category: Neelagandan, K.]]
+
[[Category: Neelagandan K]]
-
[[Category: Palani, K.]]
+
[[Category: Packianathan C]]
-
[[Category: Ponnuswamy, M N.]]
+
[[Category: Palani K]]
-
[[Category: Sundaresan, S.]]
+
[[Category: Ponnuswamy MN]]
-
[[Category: Heme]]
+
[[Category: Sundaresan S]]
-
[[Category: Iron]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxygen binding]]
+
-
[[Category: Oxygen tranport/storage]]
+
-
[[Category: Oxygen transport]]
+
-
[[Category: Transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:39:53 2009''
+

Current revision

Pigeon Hemoglobin (OXY form)

PDB ID 2r80

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools