1t2f

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{{Seed}}
 
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[[Image:1t2f.png|left|200px]]
 
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==Human B lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid==
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The line below this paragraph, containing "STRUCTURE_1t2f", creates the "Structure Box" on the page.
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<StructureSection load='1t2f' size='340' side='right'caption='[[1t2f]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1t2f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T2F FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=OXQ:4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC+ACID'>OXQ</scene></td></tr>
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{{STRUCTURE_1t2f| PDB=1t2f | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t2f OCA], [https://pdbe.org/1t2f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t2f RCSB], [https://www.ebi.ac.uk/pdbsum/1t2f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2f ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LDHB_HUMAN LDHB_HUMAN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t2/1t2f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t2f ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Plasmodium falciparum, the causative agent of malaria, relies extensively on glycolysis coupled with homolactic fermentation during its blood-borne stages for energy production. Selective inhibitors of the parasite lactate dehydrogenase (LDH), central to NAD(+) regeneration, therefore potentially provide a route to new antimalarial drugs directed against a novel molecular target. A series of heterocyclic, azole-based compounds are described that preferentially inhibit P. falciparum LDH at sub-micromolar concentrations, typically at concentrations about 100-fold lower than required for human lactate dehydrogenase inhibition. Crystal structures show these competitive inhibitors form a network of interactions with amino acids within the active site of the enzyme, stacking alongside the nicotinamide ring of the NAD(+) cofactor. These compounds display modest activity against parasitized erythrocytes, including parasite strains with known resistance to existing anti-malarials and against Plasmodium berghei in BALB/c mice. Initial toxicity data suggest the azole derivatives have generally low cytotoxicity, and preliminary pharmoco-kinetic data show favorable bioavailability and circulation times. These encouraging results suggest that further enhancement of these structures may yield candidates suitable for consideration as new therapeutics for the treatment of malaria. In combination these studies also provide strong support for the validity of targeting the Plasmodium glycolytic pathway and, in particular, LDH in the search for novel anti-malarials.
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===Human B lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid===
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Identification and activity of a series of azole-based compounds with lactate dehydrogenase-directed anti-malarial activity.,Cameron A, Read J, Tranter R, Winter VJ, Sessions RB, Brady RL, Vivas L, Easton A, Kendrick H, Croft SL, Barros D, Lavandera JL, Martin JJ, Risco F, Garcia-Ochoa S, Gamo FJ, Sanz L, Leon L, Ruiz JR, Gabarro R, Mallo A, Gomez de las Heras F J Biol Chem. 2004 Jul 23;279(30):31429-39. Epub 2004 Apr 26. PMID:15117937<ref>PMID:15117937</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1t2f" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_15117937}}, adds the Publication Abstract to the page
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*[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15117937 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15117937}}
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__TOC__
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</StructureSection>
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==Disease==
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Known disease associated with this structure: Lactate dehydrogenase-B deficiency OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=150100 150100]]
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==About this Structure==
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1T2F is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2F OCA].
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==Reference==
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<ref group="xtra">PMID:15117937</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: L-lactate dehydrogenase]]
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[[Category: Large Structures]]
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[[Category: Barros, D.]]
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[[Category: Barros D]]
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[[Category: Brady, R L.]]
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[[Category: Brady RL]]
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[[Category: Cameron, A.]]
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[[Category: Cameron A]]
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[[Category: Croft, S L.]]
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[[Category: Croft SL]]
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[[Category: Easton, A.]]
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[[Category: De Las Heras FG]]
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[[Category: Gabarro, R.]]
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[[Category: Easton A]]
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[[Category: Gamo, F J.]]
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[[Category: Gabarro R]]
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[[Category: Garcia-Ochoa, S.]]
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[[Category: Gamo FJ]]
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[[Category: Heras, F G.De Las.]]
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[[Category: Garcia-Ochoa S]]
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[[Category: Kendrick, H.]]
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[[Category: Kendrick H]]
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[[Category: Lavandera, J L.]]
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[[Category: Lavandera JL]]
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[[Category: Leon, L.]]
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[[Category: Leon L]]
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[[Category: Mallo, A.]]
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[[Category: Mallo A]]
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[[Category: Martin, J J.]]
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[[Category: Martin JJ]]
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[[Category: Read, J.]]
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[[Category: Read J]]
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[[Category: Risco, F.]]
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[[Category: Risco F]]
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[[Category: Ruiz, J R.]]
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[[Category: Ruiz JR]]
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[[Category: Sanz, L.]]
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[[Category: Sanz L]]
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[[Category: Sessions, R B.]]
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[[Category: Sessions RB]]
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[[Category: Tranter, R.]]
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[[Category: Tranter R]]
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[[Category: Vivas, L.]]
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[[Category: Vivas L]]
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[[Category: Winter, V J.]]
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[[Category: Winter VJ]]
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[[Category: Protein-ligand complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:40:33 2009''
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Current revision

Human B lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid

PDB ID 1t2f

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