2vnz

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{{Seed}}
 
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[[Image:2vnz.png|left|200px]]
 
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==Crystal structure of dithinonite reduced soybean ascorbate peroxidase mutant W41A.==
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The line below this paragraph, containing "STRUCTURE_2vnz", creates the "Structure Box" on the page.
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<StructureSection load='2vnz' size='340' side='right'caption='[[2vnz]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vnz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VNZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VNZ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_2vnz| PDB=2vnz | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vnz OCA], [https://pdbe.org/2vnz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vnz RCSB], [https://www.ebi.ac.uk/pdbsum/2vnz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vnz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q43758_SOYBN Q43758_SOYBN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/2vnz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vnz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We have previously shown [Badyal, S. K., et al. (2006) J. Biol. Chem. 281, 24512-24520] that the distal histidine (His42) in the W41A variant of ascorbate peroxidase binds to the heme iron in the ferric form of the protein but that binding of the substrate triggers a conformational change in which His42 dissociates from the heme. In this work, we show that this conformational rearrangement also occurs upon reduction of the heme iron. Thus, we present X-ray crystallographic data to show that reduction of the heme leads to dissociation of His42 from the iron in the ferrous form of W41A; spectroscopic and ligand binding data support this observation. Structural evidence indicates that heme reduction occurs through formation of a reduced, bis-histidine-ligated species that subsequently decays by dissociation of His42 from the heme. Collectively, the data provide clear evidence that conformational movement within the same heme active site can be controlled by both ligand binding and metal oxidation state. These observations are consistent with emerging data on other, more complex regulatory and sensing heme proteins, and the data are discussed in the context of our developing views in this area.
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===CRYSTAL STRUCTURE OF DITHINONITE REDUCED SOYBEAN ASCORBATE PEROXIDASE MUTANT W41A.===
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Iron oxidation state modulates active site structure in a heme peroxidase(,).,Badyal SK, Metcalfe CL, Basran J, Efimov I, Moody PC, Raven EL Biochemistry. 2008 Apr 15;47(15):4403-9. Epub 2008 Mar 20. PMID:18351739<ref>PMID:18351739</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2vnz" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18351739}}, adds the Publication Abstract to the page
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*[[Ascorbate peroxidase 3D structures|Ascorbate peroxidase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18351739 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18351739}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2VNZ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VNZ OCA].
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==Reference==
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<ref group="xtra">PMID:18351739</ref><references group="xtra"/>
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[[Category: Glycine max]]
[[Category: Glycine max]]
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[[Category: Oxidoreductase]]
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[[Category: Large Structures]]
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[[Category: Badyal, S K.]]
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[[Category: Badyal SK]]
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[[Category: Metcalfe, C L.]]
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[[Category: Metcalfe CL]]
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[[Category: Moody, P C.E.]]
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[[Category: Moody PCE]]
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[[Category: Raven, E L.]]
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[[Category: Raven EL]]
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[[Category: Apx]]
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[[Category: Dithionite reduction]]
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[[Category: Heme enzyme]]
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[[Category: Oxidoreductase]]
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[[Category: Peroxidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:57:52 2009''
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Current revision

Crystal structure of dithinonite reduced soybean ascorbate peroxidase mutant W41A.

PDB ID 2vnz

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