1sm4

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{{Seed}}
 
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[[Image:1sm4.png|left|200px]]
 
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==Crystal Structure Analysis of the Ferredoxin-NADP+ Reductase from Paprika==
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The line below this paragraph, containing "STRUCTURE_1sm4", creates the "Structure Box" on the page.
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<StructureSection load='1sm4' size='340' side='right'caption='[[1sm4]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1sm4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Capsicum_annuum Capsicum annuum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1fb3 1fb3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SM4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SM4 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_1sm4| PDB=1sm4 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sm4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sm4 OCA], [https://pdbe.org/1sm4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sm4 RCSB], [https://www.ebi.ac.uk/pdbsum/1sm4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sm4 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9M4D2_CAPAN Q9M4D2_CAPAN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sm/1sm4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sm4 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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cDNA of Capsicum annuum Yolo Wonder (paprika) has been prepared from total cellular RNA, and the complete gene encoding paprika ferredoxin-NADP(+) reductase (pFNR) precursor was sequenced and cloned from this cDNA. Fusion to a T7 promoter allowed expression in Escherichia coli. Both native and recombinant pFNR were purified to homogeneity and crystallized. The crystal structure of pFNR has been solved by Patterson search techniques using the structure of spinach ferredoxin-NADP(+) reductase as search model. The structure was refined at 2.5-A resolution to a crystallographic R-factor of 19.8% (R(free) = 26.5%). The overall structure of pFNR is similar to other members of the ferredoxin-NADP(+) reductase family, the major differences concern a long loop (residues 167-177) that forms part of the FAD binding site and some of the variable loops in surface regions. The different orientation of the FAD binding loop leads to a tighter interaction between pFNR and the adenine moiety of FAD. The physiological redox partners [2Fe-2S]-ferredoxin I and NADP(+) were modeled into the native structure of pFNR. The complexes reveal a protein-protein interaction site that is consistent with existing biochemical data and imply possible orientations for the side chain of tyrosine 362, which has to be displaced by the nicotinamide moiety of NADP(+) upon binding. A reasonable electron transfer pathway could be deduced from the modeled structures of the complexes.
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===Crystal Structure Analysis of the Ferredoxin-NADP+ Reductase from Paprika===
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Crystal structure of paprika ferredoxin-NADP+ reductase. Implications for the electron transfer pathway.,Dorowski A, Hofmann A, Steegborn C, Boicu M, Huber R J Biol Chem. 2001 Mar 23;276(12):9253-63. Epub 2000 Oct 26. PMID:11053431<ref>PMID:11053431</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_11053431}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1sm4" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11053431 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11053431}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1SM4 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Capsicum_annuum Capsicum annuum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1fb3 1fb3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SM4 OCA].
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==Reference==
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<ref group="xtra">PMID:11053431</ref><references group="xtra"/>
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[[Category: Capsicum annuum]]
[[Category: Capsicum annuum]]
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[[Category: Boicu, M.]]
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[[Category: Large Structures]]
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[[Category: Dorowski, A.]]
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[[Category: Boicu M]]
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[[Category: Hofmann, A.]]
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[[Category: Dorowski A]]
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[[Category: Huber, R.]]
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[[Category: Hofmann A]]
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[[Category: Steegborn, C.]]
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[[Category: Huber R]]
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[[Category: Oxidoreductase]]
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[[Category: Steegborn C]]
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[[Category: Rossmann fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:07:33 2009''
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Current revision

Crystal Structure Analysis of the Ferredoxin-NADP+ Reductase from Paprika

PDB ID 1sm4

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