2avw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2avw.png|left|200px]]
 
-
<!--
+
==Crystal structure of monoclinic form of streptococcus Mac-1==
-
The line below this paragraph, containing "STRUCTURE_2avw", creates the "Structure Box" on the page.
+
<StructureSection load='2avw' size='340' side='right'caption='[[2avw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2avw]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_MGAS5005 Streptococcus pyogenes MGAS5005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AVW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2avw| PDB=2avw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2avw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2avw OCA], [https://pdbe.org/2avw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2avw RCSB], [https://www.ebi.ac.uk/pdbsum/2avw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2avw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of monoclinic form of streptococcus Mac-1===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q7DAM2_STRP1 Q7DAM2_STRP1]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16472742}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16472742 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/av/2avw_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16472742}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2AVW is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_mgas5005 Streptococcus pyogenes mgas5005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2avw ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:16472742</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Streptococcus pyogenes mgas5005]]
+
[[Category: Large Structures]]
-
[[Category: Agniswamy, J.]]
+
[[Category: Streptococcus pyogenes MGAS5005]]
-
[[Category: Liu, M.]]
+
[[Category: Agniswamy J]]
-
[[Category: Musser, J M.]]
+
[[Category: Liu M]]
-
[[Category: Nagiec, M J.]]
+
[[Category: Musser JM]]
-
[[Category: Schuck, P.]]
+
[[Category: Nagiec MJ]]
-
[[Category: Sun, P D.]]
+
[[Category: Schuck P]]
-
[[Category: Mac-1]]
+
[[Category: Sun PD]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:12:04 2009''
+

Current revision

Crystal structure of monoclinic form of streptococcus Mac-1

PDB ID 2avw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools