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2opo

From Proteopedia

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{{Seed}}
 
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[[Image:2opo.png|left|200px]]
 
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==Crystal structure of the calcium-binding pollen allergen Che a 3==
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The line below this paragraph, containing "STRUCTURE_2opo", creates the "Structure Box" on the page.
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<StructureSection load='2opo' size='340' side='right'caption='[[2opo]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2opo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chenopodium_album Chenopodium album]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pmz 1pmz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OPO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OPO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2opo| PDB=2opo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2opo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2opo OCA], [https://pdbe.org/2opo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2opo RCSB], [https://www.ebi.ac.uk/pdbsum/2opo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2opo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/POLC3_CHEAL POLC3_CHEAL]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/2opo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2opo ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Two EF-hand calcium-binding allergens (polcalcins) occur in the pollen of a wide variety of unrelated plants as highly cross-reactive allergenic molecules. We report the expression, purification, immunological characterization, and the 1.75-A crystal structure of recombinant Che a 3 (rChe a 3), the polcalcin from the weed Chenopodium album. The three-dimensional structure of rChe a 3 resembles an alpha-helical fold that is essentially identical with that of the two EF-hand allergens from birch pollen, Bet v 4, and timothy grass pollen, Phl p 7. The extensive cross-reactivity between Che a 3 and Phl p 7 is demonstrated by competition experiments with IgE Abs from allergic patients as well as specific Ab probes. Amino acid residues that are conserved for the two EF-hand allergen family were identified in multiple sequence alignments of polcalcins from 15 different plants. Next, the three-dimensional structures of rChe a 3, rPhl p 7, and rBet v 4 were used to identify conserved amino acids with high surface exposition to visualize surface patches as potential targets for the polyclonal IgE Ab response of allergic patients. The essentially identical three-dimensional structures of rChe a 3, rPhl p 7, and rBet v 4 explain the extensive cross-reactivity of allergic patients IgE Abs with two EF-hand allergens from unrelated plants. In addition, analyzing the three-dimensional structures of cross-reactive Ags for conserved and surface exposed amino acids may be a first approach to mapping the conformational epitopes on disease-related Ags that are recognized by polyclonal patient Abs.
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===Crystal structure of the calcium-binding pollen allergen Che a 3===
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Three-dimensional structure of the cross-reactive pollen allergen Che a 3: visualizing cross-reactivity on the molecular surfaces of weed, grass, and tree pollen allergens.,Verdino P, Barderas R, Villalba M, Westritschnig K, Valenta R, Rodriguez R, Keller W J Immunol. 2008 Feb 15;180(4):2313-21. PMID:18250440<ref>PMID:18250440</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18250440}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2opo" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18250440 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18250440}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2OPO is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Chenopodium_album Chenopodium album]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pmz 1pmz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OPO OCA].
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==Reference==
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<ref group="xtra">PMID:18250440</ref><ref group="xtra">PMID:15208604</ref><references group="xtra"/>
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[[Category: Chenopodium album]]
[[Category: Chenopodium album]]
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[[Category: Keller, W.]]
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[[Category: Large Structures]]
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[[Category: Verdino, P.]]
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[[Category: Keller W]]
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[[Category: Allergen]]
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[[Category: Verdino P]]
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[[Category: Calcium-binding protein]]
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[[Category: Dimer]]
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[[Category: Domain-swapping]]
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[[Category: Ef-hand]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:20:58 2009''
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Current revision

Crystal structure of the calcium-binding pollen allergen Che a 3

PDB ID 2opo

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