1d2o

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{{Seed}}
 
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[[Image:1d2o.png|left|200px]]
 
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==CRYSTAL STRUCTURE OF A SINGLE B REPEAT UNIT (B1) OF COLLAGEN BINDING SURFACE PROTEIN (CNA) OF STAPHYLOCOCCUS AUREUS.==
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The line below this paragraph, containing "STRUCTURE_1d2o", creates the "Structure Box" on the page.
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<StructureSection load='1d2o' size='340' side='right'caption='[[1d2o]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1d2o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D2O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D2O FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d2o OCA], [https://pdbe.org/1d2o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d2o RCSB], [https://www.ebi.ac.uk/pdbsum/1d2o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d2o ProSAT]</span></td></tr>
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{{STRUCTURE_1d2o| PDB=1d2o | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CNA_STAAU CNA_STAAU] Mediates attachment of staphylococcal cells to collagen-containing substrata.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d2/1d2o_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1d2o ConSurf].
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<div style="clear:both"></div>
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===CRYSTAL STRUCTURE OF A SINGLE B REPEAT UNIT (B1) OF COLLAGEN BINDING SURFACE PROTEIN (CNA) OF STAPHYLOCOCCUS AUREUS.===
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==See Also==
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*[[Adhesin 3D structures|Adhesin 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_10673425}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 10673425 is the PubMed ID number.
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{{ABSTRACT_PUBMED_10673425}}
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==About this Structure==
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1D2O is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D2O OCA].
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==Reference==
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<ref group="xtra">PMID:10673425</ref><references group="xtra"/>
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[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
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[[Category: Deivanayagam, C C.S.]]
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[[Category: Deivanayagam CCS]]
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[[Category: Hook, M.]]
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[[Category: Hook M]]
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[[Category: Narayana, S V.L.]]
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[[Category: Narayana SVL]]
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[[Category: Rich, R L.]]
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[[Category: Rich RL]]
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[[Category: Beta sandwich]]
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[[Category: Cna]]
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[[Category: Collagen]]
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[[Category: Igg]]
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[[Category: Igsf]]
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[[Category: Staphylococcus aureus]]
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[[Category: Structural protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:32:00 2009''
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Current revision

CRYSTAL STRUCTURE OF A SINGLE B REPEAT UNIT (B1) OF COLLAGEN BINDING SURFACE PROTEIN (CNA) OF STAPHYLOCOCCUS AUREUS.

PDB ID 1d2o

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