2hjk

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{{Seed}}
 
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[[Image:2hjk.png|left|200px]]
 
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==Crystal Structure of HLA-B5703 and HIV-1 peptide==
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The line below this paragraph, containing "STRUCTURE_2hjk", creates the "Structure Box" on the page.
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<StructureSection load='2hjk' size='340' side='right'caption='[[2hjk]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2hjk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HJK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HJK FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hjk OCA], [https://pdbe.org/2hjk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hjk RCSB], [https://www.ebi.ac.uk/pdbsum/2hjk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hjk ProSAT]</span></td></tr>
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{{STRUCTURE_2hjk| PDB=2hjk | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9MYI6_HUMAN Q9MYI6_HUMAN] Involved in the presentation of foreign antigens to the immune system.[SAAS:SAAS00004076]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hj/2hjk_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hjk ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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HLA-B*57 is associated with slower disease progression to AIDS, and CD8+ T cell responses to B*57-restricted epitopes are thought to contribute to this protective effect. In this study, we evaluate the B*57-restricted p24 KAFSPEVIPMF (KF11) immune response which is immunodominant during chronic infection. Previously, we observed that the KF11 clade variants KGFNPEVIPMF [A2G,S4N] and KAFNPEIIMPF [S4N,V7I], sharing a position 4 mutation, are differentially recognized by KF11-specific T cells. By combining structural and cellular studies, we now demonstrate that the KF11 and [A2G,S4N] epitopes induce distinct functional responses in [A2G,S4N] and KF11-specific T cells, respectively, despite minimal structural differences between the individual B*57-peptide complexes. Recently, we also elucidated the highly distinct structure of KF11 in complex with B*5703, and have now characterized the CD8+ T cell repertoire recognizing this epitope. We now report striking features of TCR conservation both in terms of TCR Valpha and Vbeta chain usage, and throughout the hypervariable region. Collectively, our findings highlight unusual features of the B*5701/B*5703-KF11-specific immune responses which could influence disease progression and that might be important to consider when designing future vaccine regimens.
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===Crystal Structure of HLA-B5703 and HIV-1 peptide===
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Strong TCR conservation and altered T cell cross-reactivity characterize a B*57-restricted immune response in HIV-1 infection.,Gillespie GM, Stewart-Jones G, Rengasamy J, Beattie T, Bwayo JJ, Plummer FA, Kaul R, McMichael AJ, Easterbrook P, Dong T, Jones EY, Rowland-Jones SL J Immunol. 2006 Sep 15;177(6):3893-902. PMID:16951352<ref>PMID:16951352</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2hjk" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_16951352}}, adds the Publication Abstract to the page
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 16951352 is the PubMed ID number.
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*[[MHC 3D structures|MHC 3D structures]]
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*[[MHC I 3D structures|MHC I 3D structures]]
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{{ABSTRACT_PUBMED_16951352}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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2HJK is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HJK OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:16951352</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Beattie, T.]]
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[[Category: Human immunodeficiency virus 1]]
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[[Category: Bwayo, J J.]]
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[[Category: Large Structures]]
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[[Category: Gillespie, G M.A.]]
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[[Category: Beattie T]]
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[[Category: Plummer, F A.]]
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[[Category: Bwayo JJ]]
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[[Category: Rengasamy, J.]]
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[[Category: Gillespie GMA]]
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[[Category: Stewart-Jones, G.]]
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[[Category: Plummer FA]]
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[[Category: B57]]
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[[Category: Rengasamy J]]
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[[Category: Hiv]]
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[[Category: Stewart-Jones G]]
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[[Category: Hla]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:01:01 2009''
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Current revision

Crystal Structure of HLA-B5703 and HIV-1 peptide

PDB ID 2hjk

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