This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1qcq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:15, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1qcq.png|left|200px]]
 
-
<!--
+
==UBIQUITIN CONJUGATING ENZYME==
-
The line below this paragraph, containing "STRUCTURE_1qcq", creates the "Structure Box" on the page.
+
<StructureSection load='1qcq' size='340' side='right'caption='[[1qcq]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1qcq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2uce 2uce]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QCQ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qcq OCA], [https://pdbe.org/1qcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qcq RCSB], [https://www.ebi.ac.uk/pdbsum/1qcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qcq ProSAT]</span></td></tr>
-
{{STRUCTURE_1qcq| PDB=1qcq | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UBC4_YEAST UBC4_YEAST] Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. Mediates ubiquitination of PEX5.<ref>PMID:17550898</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qc/1qcq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qcq ConSurf].
 +
<div style="clear:both"></div>
-
===UBIQUITIN CONJUGATING ENZYME===
+
==See Also==
-
 
+
*[[3D structures of ubiquitin conjugating enzyme|3D structures of ubiquitin conjugating enzyme]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_8268156}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 8268156 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Large Structures]]
-
{{ABSTRACT_PUBMED_8268156}}
+
-
 
+
-
==About this Structure==
+
-
1QCQ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2uce 2uce]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QCQ OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:8268156</ref><references group="xtra"/>
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Ubiquitin--protein ligase]]
+
[[Category: Chau V]]
-
[[Category: Chau, V.]]
+
[[Category: Cook WJ]]
-
[[Category: Cook, W J.]]
+
[[Category: Jeffrey LC]]
-
[[Category: Jeffrey, L C.]]
+
[[Category: Xu Y]]
-
[[Category: Xu, Y.]]
+
-
[[Category: Ubiquitin]]
+
-
[[Category: Ubiquitin-conjugating enzyme]]
+
-
[[Category: Yeast]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:48:48 2009''
+

Current revision

UBIQUITIN CONJUGATING ENZYME

PDB ID 1qcq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools