This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ffn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ffn" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ffn, resolution 1.8&Aring;" /> '''The E41Q mutant of te...)
Current revision (16:04, 22 December 2021) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ffn.jpg|left|200px]]<br /><applet load="2ffn" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ffn, resolution 1.8&Aring;" />
 
-
'''The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F'''<br />
 
-
==About this Structure==
+
==The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F==
-
2FFN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with HEM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2FFN OCA].
+
<StructureSection load='2ffn' size='340' side='right'caption='[[2ffn]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Desulfovibrio vulgaris]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ffn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desvm Desvm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FFN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FFN FirstGlance]. <br>
-
[[Category: Higuchi, Y.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
[[Category: Komori, H.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ffn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ffn OCA], [https://pdbe.org/2ffn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ffn RCSB], [https://www.ebi.ac.uk/pdbsum/2ffn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ffn ProSAT]</span></td></tr>
-
[[Category: Morita, K.]]
+
</table>
-
[[Category: HEM]]
+
== Function ==
-
[[Category: cytochrome c3]]
+
[[https://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ff/2ffn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ffn ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:32:06 2007''
+
==See Also==
 +
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Desvm]]
 +
[[Category: Large Structures]]
 +
[[Category: Higuchi, Y]]
 +
[[Category: Komori, H]]
 +
[[Category: Morita, K]]
 +
[[Category: Cytochrome c3]]
 +
[[Category: Electron transport]]

Current revision

The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F

PDB ID 2ffn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools