This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dlm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:55, 7 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1dlm.png|left|200px]]
 
-
<!--
+
==STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA==
-
The line below this paragraph, containing "STRUCTURE_1dlm", creates the "Structure Box" on the page.
+
<StructureSection load='1dlm' size='340' side='right'caption='[[1dlm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dlm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi_ADP1 Acinetobacter baylyi ADP1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DLM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=LIO:[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL+CHOLINE'>LIO</scene></td></tr>
-
{{STRUCTURE_1dlm| PDB=1dlm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dlm OCA], [https://pdbe.org/1dlm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dlm RCSB], [https://www.ebi.ac.uk/pdbsum/1dlm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dlm ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CATA_ACIAD CATA_ACIAD]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/1dlm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dlm ConSurf].
 +
<div style="clear:both"></div>
-
===STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA===
+
==See Also==
-
 
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10801478}}, adds the Publication Abstract to the page
+
[[Category: Acinetobacter baylyi ADP1]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10801478 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Ohlendorf DH]]
-
{{ABSTRACT_PUBMED_10801478}}
+
[[Category: Vetting MW]]
-
 
+
-
==About this Structure==
+
-
1DLM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Acinetobacter_sp. Acinetobacter sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DLM OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:10801478</ref><references group="xtra"/>
+
-
[[Category: Acinetobacter sp.]]
+
-
[[Category: Catechol 1,2-dioxygenase]]
+
-
[[Category: Ohlendorf, D H.]]
+
-
[[Category: Vetting, M W.]]
+
-
[[Category: Aromatic compound degradation]]
+
-
[[Category: Dioxygenase]]
+
-
[[Category: Metalloprotein]]
+
-
[[Category: Mixed alpha helix/ beta strand]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:09:37 2009''
+

Current revision

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA

PDB ID 1dlm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dlm"
Personal tools