1auy

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{{Seed}}
 
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[[Image:1auy.png|left|200px]]
 
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==TURNIP YELLOW MOSAIC VIRUS==
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The line below this paragraph, containing "STRUCTURE_1auy", creates the "Structure Box" on the page.
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<StructureSection load='1auy' size='340' side='right'caption='[[1auy]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1auy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AUY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
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{{STRUCTURE_1auy| PDB=1auy | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1auy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1auy OCA], [https://pdbe.org/1auy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1auy RCSB], [https://www.ebi.ac.uk/pdbsum/1auy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1auy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_TYMV CAPSD_TYMV] Self-assembles to form a T=3 icosahedral capsid composed of 180 copies of the capsid protein. The capsid encapsulates the single-stranded RNA genome (PubMed:15321716, PubMed:8784351). A pentameric unit may be lost during decapsidation (PubMed:15321716, PubMed:8784351).<ref>PMID:15321716</ref> <ref>PMID:8784351</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/au/1auy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1auy ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of turnip yellow mosaic virus (TYMV) has been solved to 3.2 A resolution and an R-value of 18.7%. The structure is consistent with models based on low resolution X-ray and electron microscopy studies, with pentameric and hexameric protein aggregates protruding from the surface and forming deep valleys at the quasi three-fold axes. The N-terminal 26 residues of the A-subunit are disordered, while those of the B- and C-subunits are seen to interact around the interior of the quasi six-fold cluster where they form an annulus. The three histidine residues of each protein subunit are located in the interior and accessible for interaction with the RNA genome. The appearance of the interior surface of the virus capsid, along with buried surface area calculations, suggest that a pentameric unit is lost during decapsidation.
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===TURNIP YELLOW MOSAIC VIRUS===
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Crystal structure of turnip yellow mosaic virus.,Canady MA, Larson SB, Day J, McPherson A Nat Struct Biol. 1996 Sep;3(9):771-81. PMID:8784351<ref>PMID:8784351</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1auy" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_8784351}}, adds the Publication Abstract to the page
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 8784351 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_8784351}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1AUY is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AUY OCA].
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==Reference==
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<ref group="xtra">PMID:8784351</ref><references group="xtra"/>
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[[Category: Turnip yellow mosaic virus]]
[[Category: Turnip yellow mosaic virus]]
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[[Category: Canady, M A.]]
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[[Category: Canady MA]]
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[[Category: Day, J.]]
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[[Category: Day J]]
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[[Category: Larson, S B.]]
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[[Category: Larson SB]]
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[[Category: McPherson, A.]]
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[[Category: McPherson A]]
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[[Category: Capsid protein]]
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[[Category: Coat protein]]
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[[Category: Icosahedral virus]]
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[[Category: Jellyroll]]
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[[Category: Plant virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:29:09 2009''
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Current revision

TURNIP YELLOW MOSAIC VIRUS

PDB ID 1auy

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