1mdf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:43, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1mdf.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE==
-
The line below this paragraph, containing "STRUCTURE_1mdf", creates the "Structure Box" on the page.
+
<StructureSection load='1mdf' size='340' side='right'caption='[[1mdf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1mdf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MDF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1mdf| PDB=1mdf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mdf OCA], [https://pdbe.org/1mdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mdf RCSB], [https://www.ebi.ac.uk/pdbsum/1mdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mdf ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DHBE_BACSU DHBE_BACSU] Activation of the carboxylate group of 2,3-dihydroxy-benzoate (DHB), via ATP-dependent PPi exchange reactions, to the acyladenylate.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12221282}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12221282 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/1mdf_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12221282}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1MDF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDF OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mdf ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:12221282</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
-
[[Category: Kessler, N.]]
+
[[Category: Large Structures]]
-
[[Category: Marahiel, M A.]]
+
[[Category: Kessler N]]
-
[[Category: May, J J.]]
+
[[Category: Marahiel MA]]
-
[[Category: Stubbs, M T.]]
+
[[Category: May JJ]]
-
[[Category: Adenylation domain]]
+
[[Category: Stubbs MT]]
-
[[Category: Antibiotic biosynthesis]]
+
-
[[Category: Ligase]]
+
-
[[Category: Peptide synthetase]]
+
-
[[Category: Siderophore formation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:45:33 2009''
+

Current revision

CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE

PDB ID 1mdf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools