This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1u7h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:16, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1u7h.png|left|200px]]
 
-
<!--
+
==Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida==
-
The line below this paragraph, containing "STRUCTURE_1u7h", creates the "Structure Box" on the page.
+
<StructureSection load='1u7h' size='340' side='right'caption='[[1u7h]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1u7h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U7H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U7H FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
{{STRUCTURE_1u7h| PDB=1u7h | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u7h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u7h OCA], [https://pdbe.org/1u7h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u7h RCSB], [https://www.ebi.ac.uk/pdbsum/1u7h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u7h ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/OCD_PSEPK OCD_PSEPK] Catalyzes the conversion of L-ornithine into L-proline with release of ammonia. Is likely involved in the L-ornithine degradation pathway that allows P.putida to utilize this compound as sole carbon and nitrogen source.<ref>PMID:23806148</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15518536}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15518536 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u7/1u7h_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15518536}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1U7H is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U7H OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u7h ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:15518536</ref><references group="xtra"/>
+
<references/>
-
[[Category: Ornithine cyclodeaminase]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas putida]]
[[Category: Pseudomonas putida]]
-
[[Category: Alam, S.]]
+
[[Category: Alam S]]
-
[[Category: Frey, P A.]]
+
[[Category: Frey PA]]
-
[[Category: Goodman, J L.]]
+
[[Category: Goodman JL]]
-
[[Category: Ruzicka, F J.]]
+
[[Category: Ruzicka FJ]]
-
[[Category: Wang, S.]]
+
[[Category: Wang S]]
-
[[Category: Wedekind, J E.]]
+
[[Category: Wedekind JE]]
-
[[Category: Beta barrel]]
+
-
[[Category: Binds l-ornithine]]
+
-
[[Category: Binds l-pro]]
+
-
[[Category: Binds nad+]]
+
-
[[Category: Deaminase]]
+
-
[[Category: Helix bundle]]
+
-
[[Category: Rossmann fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:47:22 2009''
+

Current revision

Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida

PDB ID 1u7h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1u7h"
Personal tools