2ft3

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(New page: 200px<br /><applet load="2ft3" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ft3, resolution 3.400&Aring;" /> '''Crystal structure o...)
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[[Image:2ft3.gif|left|200px]]<br /><applet load="2ft3" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ft3, resolution 3.400&Aring;" />
 
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'''Crystal structure of the biglycan dimer core protein'''<br />
 
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==Overview==
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==Crystal structure of the biglycan dimer core protein==
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Biglycan and decorin are two closely related proteoglycans whose protein, cores contain leucine-rich repeats flanked by disulfides. We have, previously shown that decorin is dimeric both in solution and in crystal, structures. In this study we determined whether biglycan dimerizes and, investigated the role of dimerization in the folding and stability of, these proteoglycans. We used light scattering to show that biglycan is, dimeric in solution and solved the crystal structure of the glycoprotein, core of biglycan at 3.40-angstroms resolution. This structure reveals that, biglycan dimerizes in the same way as decorin, i.e. by apposition of the, concave inner surfaces of the leucine-rich repeat domains. We demonstrate, that low concentrations of guanidinium chloride denature biglycan and, decorin but that the denaturation is completely reversible following, removal of the guanidinium chloride, as assessed by circular dichroism, spectroscopy. Furthermore, the rate of refolding is dependent on protein, concentration, demonstrating that it is not a unimolecular process. Upon, heating, decorin shows a single structural transition at a T(m) of 45-46, degrees C but refolds completely upon cooling to 25 degrees C. This, property of decorin enabled us to show both by calorimetry and light, scattering that dimer to monomer transition coincided with unfolding and, monomer to dimer transition coincided with refolding; thus these processes, are inextricably linked. We further conclude that folded monomeric, biglycan or decorin cannot exist in solution. This implies novel, interrelated functions for the parallel beta sheet faces of these, leucine-rich repeat proteoglycans, including dimerization and, stabilization of protein folding.
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<StructureSection load='2ft3' size='340' side='right'caption='[[2ft3]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ft3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FT3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FT3 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ft3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ft3 OCA], [https://pdbe.org/2ft3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ft3 RCSB], [https://www.ebi.ac.uk/pdbsum/2ft3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ft3 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PGS1_BOVIN PGS1_BOVIN] May be involved in collagen fiber assembly.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2ft3_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ft3 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Biglycan and decorin are two closely related proteoglycans whose protein cores contain leucine-rich repeats flanked by disulfides. We have previously shown that decorin is dimeric both in solution and in crystal structures. In this study we determined whether biglycan dimerizes and investigated the role of dimerization in the folding and stability of these proteoglycans. We used light scattering to show that biglycan is dimeric in solution and solved the crystal structure of the glycoprotein core of biglycan at 3.40-angstroms resolution. This structure reveals that biglycan dimerizes in the same way as decorin, i.e. by apposition of the concave inner surfaces of the leucine-rich repeat domains. We demonstrate that low concentrations of guanidinium chloride denature biglycan and decorin but that the denaturation is completely reversible following removal of the guanidinium chloride, as assessed by circular dichroism spectroscopy. Furthermore, the rate of refolding is dependent on protein concentration, demonstrating that it is not a unimolecular process. Upon heating, decorin shows a single structural transition at a T(m) of 45-46 degrees C but refolds completely upon cooling to 25 degrees C. This property of decorin enabled us to show both by calorimetry and light scattering that dimer to monomer transition coincided with unfolding and monomer to dimer transition coincided with refolding; thus these processes are inextricably linked. We further conclude that folded monomeric biglycan or decorin cannot exist in solution. This implies novel interrelated functions for the parallel beta sheet faces of these leucine-rich repeat proteoglycans, including dimerization and stabilization of protein folding.
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==About this Structure==
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Crystal structure of the biglycan dimer and evidence that dimerization is essential for folding and stability of class I small leucine-rich repeat proteoglycans.,Scott PG, Dodd CM, Bergmann EM, Sheehan JK, Bishop PN J Biol Chem. 2006 May 12;281(19):13324-32. Epub 2006 Mar 17. PMID:16547006<ref>PMID:16547006</ref>
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2FT3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with NAG and FLC as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2FT3 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of the biglycan dimer and evidence that dimerization is essential for folding and stability of class I small leucine-rich repeat proteoglycans., Scott PG, Dodd CM, Bergmann EM, Sheehan JK, Bishop PN, J Biol Chem. 2006 May 12;281(19):13324-32. Epub 2006 Mar 17. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16547006 16547006]
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</div>
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<div class="pdbe-citations 2ft3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bergmann, E.M.]]
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[[Category: Bergmann EM]]
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[[Category: Dodd, C.M.]]
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[[Category: Dodd CM]]
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[[Category: Scott, P.G.]]
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[[Category: Scott PG]]
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[[Category: FLC]]
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[[Category: NAG]]
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[[Category: dimer interface]]
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[[Category: proteoglycan]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:45:02 2007''
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Current revision

Crystal structure of the biglycan dimer core protein

PDB ID 2ft3

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