1xt0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:40, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1xt0.png|left|200px]]
 
-
<!--
+
==The Structure of N-terminal Sec7 domain of RalF==
-
The line below this paragraph, containing "STRUCTURE_1xt0", creates the "Structure Box" on the page.
+
<StructureSection load='1xt0' size='340' side='right'caption='[[1xt0]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1xt0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XT0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XT0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.16&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1xt0| PDB=1xt0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xt0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xt0 OCA], [https://pdbe.org/1xt0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xt0 RCSB], [https://www.ebi.ac.uk/pdbsum/1xt0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xt0 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8RT31_LEGPN Q8RT31_LEGPN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xt/1xt0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xt0 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The Legionella pneumophila protein RalF is secreted into host cytosol via the Dot/Icm type IV transporter where it acts to recruit ADP-ribosylation factor (Arf) to pathogen-containing phagosomes in the establishment of a replicative organelle. The presence in RalF of the Sec7 domain, present in all Arf guanine nucleotide exchange factors, has suggested that recruitment of Arf is an early step in pathogenesis. We have determined the crystal structure of RalF and of the isolated Sec7 domain and found that RalF is made up of two domains. The Sec7 domain is homologous to mammalian Sec7 domains. The C-terminal domain forms a cap over the active site in the Sec7 domain and contains a conserved folding motif, previously observed in adaptor subunits of vesicle coat complexes. The importance of the capping domain and of the glutamate in the "glutamic finger," conserved in all Sec7 domains, to RalF functions was examined using three different assays. These data highlight the functional importance of domains other than Sec7 in Arf guanine nucleotide exchange factors to biological activities and suggest novel mechanisms of regulation of those activities.
-
===The Structure of N-terminal Sec7 domain of RalF===
+
The structure of RalF, an ADP-ribosylation factor guanine nucleotide exchange factor from Legionella pneumophila, reveals the presence of a cap over the active site.,Amor JC, Swails J, Zhu X, Roy CR, Nagai H, Ingmundson A, Cheng X, Kahn RA J Biol Chem. 2005 Jan 14;280(2):1392-400. Epub 2004 Nov 1. PMID:15520000<ref>PMID:15520000</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15520000}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1xt0" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15520000 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_15520000}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
1XT0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XT0 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:15520000</ref><references group="xtra"/>
+
[[Category: Legionella pneumophila]]
[[Category: Legionella pneumophila]]
-
[[Category: Amor, J C.]]
+
[[Category: Amor JC]]
-
[[Category: Cheng, X.]]
+
[[Category: Cheng X]]
-
[[Category: Ingmundson, A.]]
+
[[Category: Ingmundson A]]
-
[[Category: Kahn, R A.]]
+
[[Category: Kahn RA]]
-
[[Category: Nagai, H.]]
+
[[Category: Nagai H]]
-
[[Category: Roy, C R.]]
+
[[Category: Roy CR]]
-
[[Category: Swails, J.]]
+
[[Category: Swails J]]
-
[[Category: The n-terminal sec7 domain of ralf]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:11:43 2009''
+

Current revision

The Structure of N-terminal Sec7 domain of RalF

PDB ID 1xt0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools