1ov8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:32, 16 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ov8.png|left|200px]]
 
-
<!--
+
==Auracyanin B structure in space group, P65==
-
The line below this paragraph, containing "STRUCTURE_1ov8", creates the "Structure Box" on the page.
+
<StructureSection load='1ov8' size='340' side='right'caption='[[1ov8]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ov8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OV8 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1ov8| PDB=1ov8 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ov8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ov8 OCA], [https://pdbe.org/1ov8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ov8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ov8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ov8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AURB_CHLAA AURB_CHLAA] Probably a soluble electron acceptor for the integral membrane protein electron transfer alternative complex III (ACIII).<ref>PMID:1313011</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ov/1ov8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ov8 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The structure of auracyanin B, a 'blue' copper protein produced by Chloroflexus aurantiacus, has previously been solved and refined in the hexagonal space group P6(4)22 with a single molecule in the asymmetric unit. The protein has now been crystallized in space group P6(5), with unit-cell parameters a = b = 115.9, c = 108.2 A. In the new crystal form, the asymmetric unit contains four protein molecules. The structure has been solved by molecular replacement and refined at 1.9 A resolution. The final residuals are R = 19.2% and R(free) = 21.9%. In relation to the earlier crystal structure, the doubling of the unit-cell volume and the lower symmetry are explained by small rotations of the molecules with respect to one another.
-
===Auracyanin B structure in space group, P65===
+
Auracyanin B structure in space group P6(5).,Lee M, Maher MJ, Freeman HC, Guss JM Acta Crystallogr D Biol Crystallogr. 2003 Sep;59(Pt 9):1545-50. Epub 2003, Aug 19. PMID:12925783<ref>PMID:12925783</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12925783}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1ov8" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12925783 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_12925783}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
1OV8 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OV8 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:12925783</ref><references group="xtra"/>
+
[[Category: Chloroflexus aurantiacus]]
[[Category: Chloroflexus aurantiacus]]
-
[[Category: Freeman, H C.]]
+
[[Category: Large Structures]]
-
[[Category: Guss, J M.]]
+
[[Category: Freeman HC]]
-
[[Category: Lee, M.]]
+
[[Category: Guss JM]]
-
[[Category: Maher, M J.]]
+
[[Category: Lee M]]
-
[[Category: Electron transport]]
+
[[Category: Maher MJ]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:13:46 2009''
+

Current revision

Auracyanin B structure in space group, P65

PDB ID 1ov8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools