2g2y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2g2y" size="450" color="white" frame="true" align="right" spinBox="true" caption="2g2y, resolution 2.26&Aring;" /> '''Structure of E.coli ...)
Current revision (13:51, 13 March 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2g2y.gif|left|200px]]<br /><applet load="2g2y" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2g2y, resolution 2.26&Aring;" />
 
-
'''Structure of E.coli FabD complexed with malonate'''<br />
 
-
==Overview==
+
==Structure of E.coli FabD complexed with malonate==
-
Malonyl-CoA-acyl carrier protein transacylase (FabD; EC 2.3.1.39) is a key, enzyme in the fatty-acid biosynthesis pathway of bacteria, catalyzing the, transfer of a malonyl moiety from malonyl-CoA to holo acyl carrier protein, (ACP), generating malonyl-ACP and free CoASH. Malonyl-ACP, which is the, product of this reaction, is the key building block for de novo fatty-acid, biosynthesis. Various binary complex structures of the Escherichia coli, enzyme are presented, including that of the natural substrate malonyl-CoA, indicating the functional role of the highly conserved amino acids Gln11, Ser92, Arg117 and His201 and the stabilizing function of the preformed, oxyanion hole during the enzymatic reaction. Based on the presented, structural data, a possible new catalytic enzyme mechanism is discussed., The data obtained could be used in aiding the process of rational, inhibitor design.
+
<StructureSection load='2g2y' size='340' side='right'caption='[[2g2y]], [[Resolution|resolution]] 2.26&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[2g2y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G2Y FirstGlance]. <br>
-
2G2Y is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with MLI as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/[Acyl-carrier-protein]_S-malonyltransferase [Acyl-carrier-protein] S-malonyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.39 2.3.1.39] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2G2Y OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g2y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2y OCA], [https://pdbe.org/2g2y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g2y RCSB], [https://www.ebi.ac.uk/pdbsum/2g2y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2y ProSAT]</span></td></tr>
-
Mapping the active site of Escherichia coli malonyl-CoA-acyl carrier protein transacylase (FabD) by protein crystallography., Oefner C, Schulz H, D'Arcy A, Dale GE, Acta Crystallogr D Biol Crystallogr. 2006 Jun;62(Pt 6):613-8. Epub 2006, May 12. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16699188 16699188]
+
</table>
-
[[Category: Escherichia coli]]
+
== Function ==
-
[[Category: Single protein]]
+
[https://www.uniprot.org/uniprot/FABD_ECOLI FABD_ECOLI]
-
[[Category: [Acyl-carrier-protein] S-malonyltransferase]]
+
== Evolutionary Conservation ==
-
[[Category: Oefner, C.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: MLI]]
+
Check<jmol>
-
[[Category: complex]]
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g2/2g2y_consurf.spt"</scriptWhenChecked>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:55:20 2007''
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g2y ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli K-12]]
 +
[[Category: Large Structures]]
 +
[[Category: Oefner C]]

Current revision

Structure of E.coli FabD complexed with malonate

PDB ID 2g2y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2g2y"
Personal tools