1ooc

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{{Seed}}
 
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[[Image:1ooc.png|left|200px]]
 
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==Mutations in the T1.5 loop of pectate lyase A==
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The line below this paragraph, containing "STRUCTURE_1ooc", creates the "Structure Box" on the page.
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<StructureSection load='1ooc' size='340' side='right'caption='[[1ooc]], [[Resolution|resolution]] 2.94&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ooc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dickeya_chrysanthemi Dickeya chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OOC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OOC FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.94&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ooc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ooc OCA], [https://pdbe.org/1ooc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ooc RCSB], [https://www.ebi.ac.uk/pdbsum/1ooc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ooc ProSAT]</span></td></tr>
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{{STRUCTURE_1ooc| PDB=1ooc | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PLYA_DICCH PLYA_DICCH] Involved in maceration and soft-rotting of plant tissue.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/1ooc_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ooc ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pectate lyase A (PelA) is a pectate-degrading enzyme secreted by plant pathogens. PelA from Erwinia chrysanthemi has 61% amino-acid identity and a conserved structural similarity to pectate lyase E (PelE). Although similar in structure and sequence, the enzymatic characteristics of PelA differ from those for PelE. A structural alignment of PelA and PelE reveals differences in the T1.5 loop. The sequence of the T1.5 loop in PelA was mutated to the homologous sequence in PelE. The crystal structure of the PelA T1.5 mutant has been solved to 1.6 and 2.9 A resolution. The enzymatic and structural properties of the T1.5 mutant are discussed.
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===Mutations in the T1.5 loop of pectate lyase A===
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Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.,Dehdashti SJ, Doan CN, Chao KL, Yoder MD Acta Crystallogr D Biol Crystallogr. 2003 Jul;59(Pt 7):1339-42. Epub 2003, Jun 27. PMID:12832805<ref>PMID:12832805</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_12832805}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1ooc" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 12832805 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12832805}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Dickeya chrysanthemi]]
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1OOC is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OOC OCA].
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[[Category: Large Structures]]
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[[Category: Chao K]]
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==Reference==
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[[Category: Dehdashti SJ]]
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<ref group="xtra">PMID:12832805</ref><references group="xtra"/>
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[[Category: Doan CN]]
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[[Category: Erwinia chrysanthemi]]
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[[Category: Vordtriede PB]]
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[[Category: Pectate lyase]]
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[[Category: Yoder MD]]
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[[Category: Chao, K.]]
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[[Category: Dehdashti, S J.]]
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[[Category: Doan, C N.]]
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[[Category: Vordtriede, P B.]]
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[[Category: Yoder, M D.]]
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[[Category: Parallel beta helix]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:26:20 2009''
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Current revision

Mutations in the T1.5 loop of pectate lyase A

PDB ID 1ooc

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