1xhc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:45, 23 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1xhc.png|left|200px]]
 
-
<!--
+
==NADH oxidase /nitrite reductase from Pyrococcus furiosus Pfu-1140779-001==
-
The line below this paragraph, containing "STRUCTURE_1xhc", creates the "Structure Box" on the page.
+
<StructureSection load='1xhc' size='340' side='right'caption='[[1xhc]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1xhc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XHC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-
{{STRUCTURE_1xhc| PDB=1xhc | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xhc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xhc OCA], [https://pdbe.org/1xhc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xhc RCSB], [https://www.ebi.ac.uk/pdbsum/1xhc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xhc ProSAT]</span></td></tr>
-
 
+
</table>
-
===NADH oxidase /nitrite reductase from Pyrococcus furiosus Pfu-1140779-001===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/NROR_PYRFU NROR_PYRFU] Catalyzes the NADH-dependent reduction of rubredoxin (Rd), a small iron-containing redox protein (PubMed:10464233, PubMed:11398485, PubMed:15746356). Can also reduce other electron carriers, including 2,6-dichlorophenol indophenol, benzyl viologen and menadione, but rubredoxin is the most efficient electron acceptor (PubMed:10464233, PubMed:11398485, PubMed:15746356). Does not reduce ferredoxin (PubMed:10464233). Shows comparable activity with NADPH and NADH as electron donors, but NADPH is probably the preferred physiological electron donor (PubMed:10464233, PubMed:11398485). Is probably part of an oxygen detoxification system that protects P.furiosus during exposure to oxygen (PubMed:15746356).<ref>PMID:10464233</ref> <ref>PMID:11398485</ref> <ref>PMID:15746356</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1XHC is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHC OCA].
+
Check<jmol>
-
[[Category: Pyrococcus furiosus dsm 3638]]
+
<jmolCheckbox>
-
[[Category: Adams, M W.W.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xh/1xhc_consurf.spt"</scriptWhenChecked>
-
[[Category: Brereton, P S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Chen, L.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Horanyi, P.]]
+
</jmolCheckbox>
-
[[Category: II, F L.Poole.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xhc ConSurf].
-
[[Category: III, W B.Arendall.]]
+
<div style="clear:both"></div>
-
[[Category: Izumi, M.]]
+
== References ==
-
[[Category: Jr., F E.Jenney.]]
+
<references/>
-
[[Category: Lee, D.]]
+
__TOC__
-
[[Category: Liu, Z J.]]
+
</StructureSection>
-
[[Category: Richardson, D C.]]
+
[[Category: Large Structures]]
-
[[Category: Richardson, J S.]]
+
[[Category: Pyrococcus furiosus DSM 3638]]
-
[[Category: Rose, J P.]]
+
[[Category: Adams MWW]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Arendall III WB]]
-
[[Category: Shah, A.]]
+
[[Category: Brereton PS]]
-
[[Category: Shah, C.]]
+
[[Category: Chen L]]
-
[[Category: Sugar, F J.]]
+
[[Category: Horanyi P]]
-
[[Category: Tempel, W.]]
+
[[Category: Izumi M]]
-
[[Category: Wang, B C.]]
+
[[Category: Jenney Jr FE]]
-
[[Category: Weinberg, M V.]]
+
[[Category: Lee D]]
-
[[Category: Hyperthermophile]]
+
[[Category: Liu Z-J]]
-
[[Category: Nadh oxidase]]
+
[[Category: Poole II FL]]
-
[[Category: Nitrite reductase]]
+
[[Category: Richardson DC]]
-
[[Category: Protein structure initiative]]
+
[[Category: Richardson JS]]
-
[[Category: Psi]]
+
[[Category: Rose JP]]
-
[[Category: Pyrococcus furiosus]]
+
[[Category: Shah A]]
-
[[Category: Secsg]]
+
[[Category: Shah C]]
-
[[Category: Southeast collaboratory for structural genomic]]
+
[[Category: Sugar FJ]]
-
 
+
[[Category: Tempel W]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:46:36 2009''
+
[[Category: Wang B-C]]
 +
[[Category: Weinberg MV]]

Current revision

NADH oxidase /nitrite reductase from Pyrococcus furiosus Pfu-1140779-001

PDB ID 1xhc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xhc"
Personal tools