1m9w

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{{Seed}}
 
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[[Image:1m9w.png|left|200px]]
 
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==Study of electrostatic potential surface distribution using high resolution side-chain conformation determined by NMR==
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The line below this paragraph, containing "STRUCTURE_1m9w", creates the "Structure Box" on the page.
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<StructureSection load='1m9w' size='340' side='right'caption='[[1m9w]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1m9w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M9W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M9W FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m9w OCA], [https://pdbe.org/1m9w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m9w RCSB], [https://www.ebi.ac.uk/pdbsum/1m9w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m9w ProSAT]</span></td></tr>
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{{STRUCTURE_1m9w| PDB=1m9w | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PLAS_SYNY3 PLAS_SYNY3] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.[HAMAP-Rule:MF_00566]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/1m9w_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m9w ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Plastocyanin is a small (approximately 10 kDa), type I blue copper protein that works as an electron donor to photosystem I from cytochrome f in both chloroplast systems and in some strains of cyanobacteria. Comparative studies of the kinetic mechanisms of plastocyanins in different organisms show that the electron transfer from photosystem I happens by simple collision in cyanobacteria but through a intermediate transition complex in green algae and superior plants. Previous work has proved that this effect cannot be explained by structural variations across the different plastocyanins but it can be explained by differences in the electrostatic potential distribution at the protein surface. In that case, minor conformational errors at the amino acid side chain level may imply an important effect in the electrostatic potential distribution calculation. In this work we present a high resolution study of side chain conformation by homonuclear NMR for the reduced wild-type plastocyanin Synechocystis using intensity ratios for 2D-NOESY and 2D-H,H-TOCSY cross peaks at different mixing times. We also present the corresponding comparison with different plastocyanin structures and the effect in the electrostatic potential distribution at the protein surface. We discuss the importance of indirect J-coupling information from TOCSY-type experiments as complement for intraresidue distances derived from NOESY experiments in the determination of side chain orientation and stereo-specific assignments.
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===Study of electrostatic potential surface distribution using high resolution side-chain conformation determined by NMR===
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Study of electrostatic potential surface distribution of wild-type plastocyanin Synechocystis solution structure determined by homonuclear NMR.,Monleon D, Celda B Biopolymers. 2003 Oct;70(2):212-20. PMID:14517909<ref>PMID:14517909</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1m9w" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_14517909}}, adds the Publication Abstract to the page
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*[[Plastocyanin 3D structures|Plastocyanin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 14517909 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_14517909}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1M9W is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M9W OCA].
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[[Category: Synechocystis sp]]
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[[Category: Celda B]]
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==Reference==
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[[Category: Monleon D]]
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<ref group="xtra">PMID:14517909</ref><references group="xtra"/>
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[[Category: Synechocystis sp.]]
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[[Category: Celda, B.]]
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[[Category: Monleon, D.]]
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[[Category: Congen]]
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[[Category: Sidechain orientation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:58:11 2009''
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Current revision

Study of electrostatic potential surface distribution using high resolution side-chain conformation determined by NMR

PDB ID 1m9w

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