1md3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:18, 25 October 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1md3.png|left|200px]]
 
-
<!--
+
==A folding mutant of human class pi glutathione transferase, created by mutating glycine 146 of the wild-type protein to alanine==
-
The line below this paragraph, containing "STRUCTURE_1md3", creates the "Structure Box" on the page.
+
<StructureSection load='1md3' size='340' side='right'caption='[[1md3]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1md3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MD3 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
-
{{STRUCTURE_1md3| PDB=1md3 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1md3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1md3 OCA], [https://pdbe.org/1md3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1md3 RCSB], [https://www.ebi.ac.uk/pdbsum/1md3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1md3 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GSTP1_HUMAN GSTP1_HUMAN] Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. Regulates negatively CDK5 activity via p25/p35 translocation to prevent neurodegeneration.<ref>PMID:21668448</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/1md3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1md3 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
In human glutathione transferase P1-1 (hGSTP1-1) position 146 is occupied by a glycine residue, which is located in a bend of a long loop that together with the alpha6-helix forms a substructure (GST motif II) maintained in all soluble GSTs. In the present study G146A and G146V mutants were generated by site-directed mutagenesis in order to investigate the function played by this conserved residue in folding and stability of hGSTP1-1. Crystallographic analysis of the G146V variant, expressed at the permissive temperature of 25 degrees C, indicates that the mutation causes a substantial change of the backbone conformation because of steric hindrance. Stability measurements indicate that this mutant is inactivated at a temperature as low as 32 degrees C. The structure of the G146A mutant is identical to that of the wild type with the mutated residue having main-chain bond angles in a high energy region of the Ramachandran plot. However even this Gly --&gt; Ala substitution inactivates the enzyme at 37 degrees C. Thermodynamic analysis of all variants confirms, together with previous findings, the critical role played by GST motif II for overall protein stability. Analysis of reactivation in vitro indicates that any mutation of Gly-146 alters the folding pathway by favoring aggregation at 37 degrees C. It is hypothesized that the GST motif II is involved in the nucleation mechanism of the protein and that the substitution of Gly-146 alters this transient substructure. Gly-146 is part of the buried local sequence GXXh(T/S)XXDh (X is any residue and h is a hydrophobic residue), conserved in all GSTs and related proteins that seems to behave as a characteristic structural module important for protein folding and stability.
-
===A folding mutant of human class pi glutathione transferase, created by mutating glycine 146 of the wild-type protein to alanine===
+
Contribution of glycine 146 to a conserved folding module affecting stability and refolding of human glutathione transferase p1-1.,Kong GK, Polekhina G, McKinstry WJ, Parker MW, Dragani B, Aceto A, Paludi D, Principe DR, Mannervik B, Stenberg G J Biol Chem. 2003 Jan 10;278(2):1291-302. Epub 2002 Oct 31. PMID:12414796<ref>PMID:12414796</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1md3" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_12414796}}, adds the Publication Abstract to the page
+
*[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12414796 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_12414796}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
1MD3 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MD3 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:12414796</ref><references group="xtra"/>
+
-
[[Category: Glutathione transferase]]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Aceto, A.]]
+
[[Category: Large Structures]]
-
[[Category: Cocco, R.]]
+
[[Category: Aceto A]]
-
[[Category: Dragani, B.]]
+
[[Category: Cocco R]]
-
[[Category: Kong, G K.W.]]
+
[[Category: Dragani B]]
-
[[Category: Mannervik, B.]]
+
[[Category: Kong GK-W]]
-
[[Category: McKinstry, W J.]]
+
[[Category: Mannervik B]]
-
[[Category: Parker, M W.]]
+
[[Category: McKinstry WJ]]
-
[[Category: Polekhina, G.]]
+
[[Category: Parker MW]]
-
[[Category: Stenberg, G.]]
+
[[Category: Polekhina G]]
-
[[Category: Conserved folding module]]
+
[[Category: Stenberg G]]
-
[[Category: Gst]]
+
-
[[Category: Nucleation mechanism]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:09:42 2009''
+

Current revision

A folding mutant of human class pi glutathione transferase, created by mutating glycine 146 of the wild-type protein to alanine

PDB ID 1md3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools