1lru

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:35, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1lru.png|left|200px]]
 
-
<!--
+
==Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinonin==
-
The line below this paragraph, containing "STRUCTURE_1lru", creates the "Structure Box" on the page.
+
<StructureSection load='1lru' size='340' side='right'caption='[[1lru]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1lru]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LRU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LRU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1lru| PDB=1lru | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lru FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lru OCA], [https://pdbe.org/1lru PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lru RCSB], [https://www.ebi.ac.uk/pdbsum/1lru PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lru ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinonin===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12126617}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12126617 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lr/1lru_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12126617}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1LRU is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LRU OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lru ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:12126617</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Peptide deformylase]]
+
[[Category: Large Structures]]
-
[[Category: Blanc, V.]]
+
[[Category: Blanc V]]
-
[[Category: Chevrier, M.]]
+
[[Category: Chevrier M]]
-
[[Category: Dupuy, A.]]
+
[[Category: Dupuy A]]
-
[[Category: Famechon, A.]]
+
[[Category: Famechon A]]
-
[[Category: Giglione, C.]]
+
[[Category: Giglione C]]
-
[[Category: Gil, P.]]
+
[[Category: Gil P]]
-
[[Category: Guilloteau, J P.]]
+
[[Category: Guilloteau J-P]]
-
[[Category: Mathieu, M.]]
+
[[Category: Mathieu M]]
-
[[Category: Meinnel, T.]]
+
[[Category: Meinnel T]]
-
[[Category: Mikol, V.]]
+
[[Category: Mikol V]]
-
[[Category: Actinonin]]
+
-
[[Category: Inhibition]]
+
-
[[Category: Polypeptide deformylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:28:24 2009''
+

Current revision

Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinonin

PDB ID 1lru

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1lru"
Personal tools