This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1my6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:49, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1my6.png|left|200px]]
 
-
<!--
+
==The 1.6 A Structure of Fe-Superoxide Dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus : Correlation of EPR and Structural Characteristics==
-
The line below this paragraph, containing "STRUCTURE_1my6", creates the "Structure Box" on the page.
+
<StructureSection load='1my6' size='340' side='right'caption='[[1my6]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1my6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MY6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
{{STRUCTURE_1my6| PDB=1my6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1my6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1my6 OCA], [https://pdbe.org/1my6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1my6 RCSB], [https://www.ebi.ac.uk/pdbsum/1my6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1my6 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8DIR2_THEVB Q8DIR2_THEVB] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000414]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/my/1my6_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1my6 ConSurf].
 +
<div style="clear:both"></div>
-
===The 1.6 A Structure of Fe-Superoxide Dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus : Correlation of EPR and Structural Characteristics===
+
==See Also==
-
 
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12827458}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12827458 is the PubMed ID number.
+
[[Category: Thermosynechococcus vestitus]]
-
-->
+
[[Category: Cascio D]]
-
{{ABSTRACT_PUBMED_12827458}}
+
[[Category: Kerfeld CA]]
-
 
+
[[Category: Sawaya MR]]
-
==About this Structure==
+
[[Category: Yeates TO]]
-
1MY6 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MY6 OCA].
+
[[Category: Yoshida SM]]
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:12827458</ref><references group="xtra"/>
+
-
[[Category: Superoxide dismutase]]
+
-
[[Category: Thermosynechococcus elongatus]]
+
-
[[Category: Cascio, D.]]
+
-
[[Category: Kerfeld, C A.]]
+
-
[[Category: Sawaya, M R.]]
+
-
[[Category: Yeates, T O.]]
+
-
[[Category: Yoshida, S M.]]
+
-
[[Category: Cyanobacteria]]
+
-
[[Category: Fesod]]
+
-
[[Category: Iron speroxide dismutase]]
+
-
[[Category: Reactive oxygen species]]
+
-
[[Category: Sod]]
+
-
[[Category: Superoxide dismutase]]
+
-
[[Category: Thermophile]]
+
-
[[Category: Thermosynechococcus]]
+
-
[[Category: Thermosynechococcus elongatus]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:35:23 2009''
+

Current revision

The 1.6 A Structure of Fe-Superoxide Dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus : Correlation of EPR and Structural Characteristics

PDB ID 1my6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1my6"
Personal tools