This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2exi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:20, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2exi.png|left|200px]]
 
-
<!--
+
==Structure of the family43 beta-Xylosidase D15G mutant from geobacillus stearothermophilus==
-
The line below this paragraph, containing "STRUCTURE_2exi", creates the "Structure Box" on the page.
+
<StructureSection load='2exi' size='340' side='right'caption='[[2exi]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2exi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EXI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
-
{{STRUCTURE_2exi| PDB=2exi | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2exi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2exi OCA], [https://pdbe.org/2exi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2exi RCSB], [https://www.ebi.ac.uk/pdbsum/2exi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2exi ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q09LX0_GEOSE Q09LX0_GEOSE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/2exi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2exi ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of the family43 beta-Xylosidase D15G mutant from geobacillus stearothermophilus===
+
==See Also==
-
 
+
*[[Xylosidase 3D structures|Xylosidase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16631196}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 16631196 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_16631196}}
+
-
 
+
-
==About this Structure==
+
-
2EXI is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXI OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:16631196</ref><references group="xtra"/>
+
[[Category: Geobacillus stearothermophilus]]
[[Category: Geobacillus stearothermophilus]]
-
[[Category: Xylan 1,4-beta-xylosidase]]
+
[[Category: Large Structures]]
-
[[Category: Brux, C.]]
+
[[Category: Brux C]]
-
[[Category: Niefind, K.]]
+
[[Category: Niefind K]]
-
[[Category: Schomburg, D.]]
+
[[Category: Schomburg D]]
-
[[Category: Shallom-Shezifi, D.]]
+
[[Category: Shallom-Shezifi D]]
-
[[Category: Shoham, Y.]]
+
[[Category: Shoham Y]]
-
[[Category: Family43]]
+
-
[[Category: Glykosidase]]
+
-
[[Category: Hydrolsase]]
+
-
[[Category: Xylosidase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:50:39 2009''
+

Current revision

Structure of the family43 beta-Xylosidase D15G mutant from geobacillus stearothermophilus

PDB ID 2exi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools