2oct

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{{Seed}}
 
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[[Image:2oct.png|left|200px]]
 
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==Stefin B (Cystatin B) tetramer==
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The line below this paragraph, containing "STRUCTURE_2oct", creates the "Structure Box" on the page.
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<StructureSection load='2oct' size='340' side='right'caption='[[2oct]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2oct]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OCT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OCT FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oct OCA], [https://pdbe.org/2oct PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oct RCSB], [https://www.ebi.ac.uk/pdbsum/2oct PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oct ProSAT]</span></td></tr>
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{{STRUCTURE_2oct| PDB=2oct | SCENE= }}
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/CYTB_HUMAN CYTB_HUMAN] Defects in CSTB are the cause of progressive myoclonic epilepsy type 1 (EPM1) [MIM:[https://omim.org/entry/254800 254800]. EPM1 is an autosomal recessive disorder characterized by severe, stimulus-sensitive myoclonus and tonic-clonic seizures. The onset, occurring between 6 and 13 years of age, is characterized by convulsions. Myoclonus begins 1 to 5 years later. The twitchings occur predominantly in the proximal muscles of the extremities and are bilaterally symmetrical, although asynchronous. At first small, they become late in the clinical course so violent that the victim is thrown to the floor. Mental deterioration and eventually dementia develop.<ref>PMID:9012407</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/CYTB_HUMAN CYTB_HUMAN] This is an intracellular thiol proteinase inhibitor. Tightly binding reversible inhibitor of cathepsins L, H and B.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/2oct_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oct ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Here we present the tetrameric structure of stefin B, which is the result of a process by which two domain-swapped dimers of stefin B are transformed into tetramers. The transformation involves a previously unidentified process of extensive intermolecular contacts, termed hand shaking, which occurs concurrently with trans to cis isomerization of proline 74. This proline residue is widely conserved throughout the cystatin superfamily, a member of which, human cystatin C, is the key protein in cerebral amyloid angiopathy. These results are consistent with the hypothesis that isomerization of proline residues can play a decisive role in amyloidogenesis.
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===Stefin B (Cystatin B) tetramer===
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Essential role of proline isomerization in stefin B tetramer formation.,Jenko Kokalj S, Guncar G, Stern I, Morgan G, Rabzelj S, Kenig M, Staniforth RA, Waltho JP, Zerovnik E, Turk D J Mol Biol. 2007 Mar 9;366(5):1569-79. Epub 2006 Dec 16. PMID:17217964<ref>PMID:17217964</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_17217964}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2oct" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17217964 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17217964}}
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__TOC__
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</StructureSection>
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==Disease==
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Known disease associated with this structure: Epilepsy, progressive myoclonic 1 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601145 601145]]
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==About this Structure==
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2OCT is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OCT OCA].
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==Reference==
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<ref group="xtra">PMID:17217964</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Guncar, G.]]
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[[Category: Large Structures]]
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[[Category: Kokalj, S Jenko.]]
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[[Category: Guncar G]]
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[[Category: Turk, D.]]
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[[Category: Jenko Kokalj S]]
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[[Category: Amyloid]]
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[[Category: Turk D]]
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[[Category: Cystatin]]
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[[Category: Domain-swapping]]
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[[Category: Hand shaking]]
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[[Category: Proline isomerization]]
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[[Category: Stefin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:54:13 2009''
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Current revision

Stefin B (Cystatin B) tetramer

PDB ID 2oct

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