2ese

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{{Seed}}
 
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[[Image:2ese.png|left|200px]]
 
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==Structure of the SAM domain of Vts1p in complex with RNA==
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The line below this paragraph, containing "STRUCTURE_2ese", creates the "Structure Box" on the page.
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<StructureSection load='2ese' size='340' side='right'caption='[[2ese]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ese]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ESE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ESE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ese FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ese OCA], [https://pdbe.org/2ese PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ese RCSB], [https://www.ebi.ac.uk/pdbsum/2ese PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ese ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_2ese| PDB=2ese | SCENE= }}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/es/2ese_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ese ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Although the abundant sterile alpha motif (SAM) domain was originally classified as a protein-protein interaction domain, it has recently been shown that certain SAM domains have the ability to bind RNA, defining a new type of post-transcriptional gene regulator. To further understand the function of SAM-RNA recognition, we determined the solution structures of the SAM domain of the Saccharomyces cerevisiae Vts1p (Vts1p-SAM) and the Smaug response element (SRE) stem-loop RNA as a complex and in isolation. The structures show that Vts1p-SAM recognizes predominantly the shape of the SRE rather than its sequence, with the exception of a G located at the tip of the pentaloop. Using microarray gene profiling, we identified several genes in S. cerevisiae that seem to be regulated by Vts1p and contain one or more copies of the SRE.
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===Structure of the SAM domain of Vts1p in complex with RNA===
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Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.,Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH Nat Struct Mol Biol. 2006 Feb;13(2):160-7. Epub 2006 Jan 22. PMID:16429156<ref>PMID:16429156</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_16429156}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2ese" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 16429156 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16429156}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Atcc 18824]]
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2ESE is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ESE OCA].
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[[Category: Large Structures]]
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[[Category: Allain, F H.T]]
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==Reference==
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<ref group="xtra">PMID:16429156</ref><references group="xtra"/>
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[[Category: Saccharomyces cerevisiae]]
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[[Category: Allain, F H.T.]]
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[[Category: Protein-rna complex]]
[[Category: Protein-rna complex]]
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[[Category: Protein/rna complex complex]]
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[[Category: Protein-rna complex complex]]
[[Category: Sam domain]]
[[Category: Sam domain]]
[[Category: Shape specific recognition]]
[[Category: Shape specific recognition]]
[[Category: Stem-loop]]
[[Category: Stem-loop]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 01:58:18 2009''
 

Current revision

Structure of the SAM domain of Vts1p in complex with RNA

PDB ID 2ese

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