1y07

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:37, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1y07.png|left|200px]]
 
-
<!--
+
==Crystal structure of the superoxide reductase from Treponema pallidum==
-
The line below this paragraph, containing "STRUCTURE_1y07", creates the "Structure Box" on the page.
+
<StructureSection load='1y07' size='340' side='right'caption='[[1y07]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1y07]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Treponema_pallidum_subsp._pallidum_str._Nichols Treponema pallidum subsp. pallidum str. Nichols]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y07 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1y07| PDB=1y07 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y07 OCA], [https://pdbe.org/1y07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y07 RCSB], [https://www.ebi.ac.uk/pdbsum/1y07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y07 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O83795_TREPA O83795_TREPA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y0/1y07_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y07 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of the superoxide reductase from Treponema pallidum===
+
==See Also==
-
 
+
*[[Superoxide Reductase|Superoxide Reductase]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16791639}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16791639 is the PubMed ID number.
+
[[Category: Treponema pallidum subsp. pallidum str. Nichols]]
-
-->
+
[[Category: Auchere F]]
-
{{ABSTRACT_PUBMED_16791639}}
+
[[Category: Bonifacio C]]
-
 
+
[[Category: Carvalho AL]]
-
==About this Structure==
+
[[Category: Moura J]]
-
1Y07 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Treponema_pallidum_subsp._pallidum_str._nichols Treponema pallidum subsp. pallidum str. nichols]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y07 OCA].
+
[[Category: Romao MJ]]
-
 
+
[[Category: Santos-Silva T]]
-
==Reference==
+
[[Category: Trincao J]]
-
<ref group="xtra">PMID:16791639</ref><references group="xtra"/>
+
-
[[Category: Superoxide reductase]]
+
-
[[Category: Treponema pallidum subsp. pallidum str. nichols]]
+
-
[[Category: Auchere, F.]]
+
-
[[Category: Bonifacio, C.]]
+
-
[[Category: Carvalho, A L.]]
+
-
[[Category: Moura, J.]]
+
-
[[Category: Romao, M J.]]
+
-
[[Category: Santos-Silva, T.]]
+
-
[[Category: Trincao, J.]]
+
-
[[Category: Beta-sheet]]
+
-
[[Category: Iron binding]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:30:41 2009''
+

Current revision

Crystal structure of the superoxide reductase from Treponema pallidum

PDB ID 1y07

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools