2j55

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 1 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2j55.png|left|200px]]
 
-
<!--
+
==X-ray reduced Paraccocus denitrificans methylamine dehydrogenase O- quinone in complex with amicyanin.==
-
The line below this paragraph, containing "STRUCTURE_2j55", creates the "Structure Box" on the page.
+
<StructureSection load='2j55' size='340' side='right'caption='[[2j55]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2j55]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J55 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
-
{{STRUCTURE_2j55| PDB=2j55 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j55 OCA], [https://pdbe.org/2j55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j55 RCSB], [https://www.ebi.ac.uk/pdbsum/2j55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j55 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMCY_PARDE AMCY_PARDE] Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/2j55_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j55 ConSurf].
 +
<div style="clear:both"></div>
-
===X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE O-QUINONE IN COMPLEX WITH AMICYANIN.===
+
==See Also==
-
 
+
*[[Amicyanin 3D structures|Amicyanin 3D structures]]
-
 
+
*[[Methylamine dehydrogenase|Methylamine dehydrogenase]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_17211075}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17211075 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
-
{{ABSTRACT_PUBMED_17211075}}
+
-
 
+
-
==About this Structure==
+
-
2J55 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J55 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:17211075</ref><references group="xtra"/>
+
-
[[Category: Amine dehydrogenase]]
+
[[Category: Paracoccus denitrificans]]
[[Category: Paracoccus denitrificans]]
-
[[Category: Davidson, V.]]
+
[[Category: Davidson VL]]
-
[[Category: Pahl, R.]]
+
[[Category: Pahl R]]
-
[[Category: Pearson, A R.]]
+
[[Category: Pearson AR]]
-
[[Category: Wilmot, C M.]]
+
[[Category: Wilmot CM]]
-
[[Category: Copper]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Methylamine dehydrogenase single crystal microspectrophoto]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Periplasmic]]
+
-
[[Category: Transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:21:06 2009''
+

Current revision

X-ray reduced Paraccocus denitrificans methylamine dehydrogenase O- quinone in complex with amicyanin.

PDB ID 2j55

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools