This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2avf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:42, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2avf.png|left|200px]]
 
-
<!--
+
==Crystal Structure of C-terminal Desundecapeptide Nitrite Reductase from Achromobacter cycloclastes==
-
The line below this paragraph, containing "STRUCTURE_2avf", creates the "Structure Box" on the page.
+
<StructureSection load='2avf' size='340' side='right'caption='[[2avf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2avf]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_cycloclastes Achromobacter cycloclastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AVF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
{{STRUCTURE_2avf| PDB=2avf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2avf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2avf OCA], [https://pdbe.org/2avf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2avf RCSB], [https://www.ebi.ac.uk/pdbsum/2avf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2avf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIR_ACHCY NIR_ACHCY]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/av/2avf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2avf ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of C-terminal Desundecapeptide Nitrite Reductase from Achromobacter cycloclastes===
+
==See Also==
-
 
+
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16293231}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 16293231 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_16293231}}
+
-
 
+
-
==About this Structure==
+
-
2AVF is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Achromobacter_cycloclastes Achromobacter cycloclastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:16293231</ref><references group="xtra"/>
+
[[Category: Achromobacter cycloclastes]]
[[Category: Achromobacter cycloclastes]]
-
[[Category: An, X M.]]
+
[[Category: Large Structures]]
-
[[Category: Chang, T.]]
+
[[Category: An XM]]
-
[[Category: Chang, W C.]]
+
[[Category: Chang T]]
-
[[Category: Chang, W R.]]
+
[[Category: Chang WC]]
-
[[Category: Chen, C J.]]
+
[[Category: Chang WR]]
-
[[Category: Gui, L L.]]
+
[[Category: Chen CJ]]
-
[[Category: Li, H T.]]
+
[[Category: Gui LL]]
-
[[Category: Liu, M Y.]]
+
[[Category: Li HT]]
-
[[Category: Zhang, J P.]]
+
[[Category: Liu MY]]
-
[[Category: Beta barrel trimer]]
+
[[Category: Zhang JP]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:17:13 2009''
+

Current revision

Crystal Structure of C-terminal Desundecapeptide Nitrite Reductase from Achromobacter cycloclastes

PDB ID 2avf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools