1qmv

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{{Seed}}
 
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[[Image:1qmv.png|left|200px]]
 
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==thioredoxin peroxidase B from red blood cells==
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The line below this paragraph, containing "STRUCTURE_1qmv", creates the "Structure Box" on the page.
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<StructureSection load='1qmv' size='340' side='right'caption='[[1qmv]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1qmv]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QMV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QMV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=NCB:N-CARBAMOYL-ALANINE'>NCB</scene></td></tr>
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{{STRUCTURE_1qmv| PDB=1qmv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qmv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qmv OCA], [https://pdbe.org/1qmv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qmv RCSB], [https://www.ebi.ac.uk/pdbsum/1qmv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qmv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PRDX2_HUMAN PRDX2_HUMAN] Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/1qmv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qmv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: The peroxiredoxins (Prxs) are an emerging family of multifunctional enzymes that exhibit peroxidase activity in vitro, and in vivo participate in a range of cellular processes known to be sensitive to reactive oxygen species. Thioredoxin peroxidase B (TPx-B), a 2-Cys type II Prx from erythrocytes, promotes potassium efflux and down-regulates apoptosis and the recruitment of monocytes by endothelial tissue. RESULTS: The crystal structure of human decameric TPx-B purified from erythrocytes has been determined to 1.7 [corrected)] A resolution. The structure is a toroid comprising five dimers linked end-on through predominantly hydrophobic interactions, and is proposed to represent an intermediate in the in vivo reaction cycle. In the crystal structure, Cys51, the site of peroxide reduction, is oxidised to cysteine sulphinic acid. The residue Cys172, lies approximately 10 A away from Cys51 [corrected]. CONCLUSIONS: The oxidation of Cys51 appears to have trapped the structure into a stable decamer, as confirmed by sedimentation analysis. A comparison with two previously reported dimeric Prx structures reveals that the catalytic cycle of 2-Cys Prx requires significant conformational changes that include the unwinding of the active-site helix and the movement of four loops. It is proposed that the stable decamer forms in vivo under conditions of oxidative stress. Similar decameric structures of TPx-B have been observed by electron microscopy, which show the protein associated with the erythrocyte membrane.
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===THIOREDOXIN PEROXIDASE B FROM RED BLOOD CELLS===
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Crystal structure of decameric 2-Cys peroxiredoxin from human erythrocytes at 1.7 A resolution.,Schroder E, Littlechild JA, Lebedev AA, Errington N, Vagin AA, Isupov MN Structure. 2000 Jun 15;8(6):605-15. PMID:10873855<ref>PMID:10873855</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1qmv" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_10873855}}, adds the Publication Abstract to the page
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*[[Pal|Pal]]
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(as it appears on PubMed at http://www.pubmed.gov), where 10873855 is the PubMed ID number.
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*[[Peroxiredoxin 3D structures|Peroxiredoxin 3D structures]]
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== References ==
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{{ABSTRACT_PUBMED_10873855}}
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<references/>
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__TOC__
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==About this Structure==
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</StructureSection>
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1QMV is a 10 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QMV OCA].
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==Reference==
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<ref group="xtra">PMID:10873855</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Errington, N.]]
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[[Category: Large Structures]]
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[[Category: Isupov, N N.]]
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[[Category: Errington N]]
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[[Category: Lebedev, A A.]]
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[[Category: Isupov MN]]
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[[Category: Littlechild, J A.]]
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[[Category: Lebedev AA]]
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[[Category: Schroder, E.]]
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[[Category: Littlechild JA]]
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[[Category: Vagin, A A.]]
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[[Category: Schroder E]]
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[[Category: Peroxidase]]
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[[Category: Vagin AA]]
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[[Category: Peroxiredoxin]]
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[[Category: Sulphinic acid]]
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[[Category: Thioredoxin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:47:38 2009''
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Current revision

thioredoxin peroxidase B from red blood cells

PDB ID 1qmv

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