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1pdm

From Proteopedia

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{{Seed}}
 
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[[Image:1pdm.png|left|200px]]
 
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<!--
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==Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate==
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The line below this paragraph, containing "STRUCTURE_1pdm", creates the "Structure Box" on the page.
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<SX load='1pdm' size='340' side='right' viewer='molstar' caption='[[1pdm]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1pdm]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PDM FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdm OCA], [https://pdbe.org/1pdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pdm RCSB], [https://www.ebi.ac.uk/pdbsum/1pdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdm ProSAT]</span></td></tr>
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{{STRUCTURE_1pdm| PDB=1pdm | SCENE= }}
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</table>
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== Function ==
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===Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate===
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[https://www.uniprot.org/uniprot/BP08_BPT4 BP08_BPT4] Baseplate protein that is part of the baseplate wedge. Involved in the tail assembly.<ref>PMID:15315755</ref> <ref>PMID:21129200</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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<!--
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_12923574}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 12923574 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdm_consurf.spt"</scriptWhenChecked>
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-->
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_12923574}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdm ConSurf].
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1PDM is a 12 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDM OCA].
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<div style="clear:both"></div>
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:12923574</ref><references group="xtra"/>
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__TOC__
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[[Category: Enterobacteria phage t4]]
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</SX>
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[[Category: Arisaka, F.]]
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[[Category: Escherichia virus T4]]
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[[Category: Chipman, P R.]]
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[[Category: Large Structures]]
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[[Category: Kanamaru, S.]]
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[[Category: Arisaka F]]
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[[Category: Kostyuchenko, V A.]]
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[[Category: Chipman PR]]
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[[Category: Leiman, P G.]]
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[[Category: Kanamaru S]]
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[[Category: Mesyanzhinov, V V.]]
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[[Category: Kostyuchenko VA]]
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[[Category: Raaij, M J.van.]]
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[[Category: Leiman PG]]
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[[Category: Rossmann, M G.]]
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[[Category: Mesyanzhinov VV]]
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[[Category: Structural protein]]
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[[Category: Rossmann MG]]
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[[Category: Van Raaij MJ]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:54:36 2009''
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Current revision

Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate

1pdm, resolution 12.00Å

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OCA

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