This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1m1r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:30, 10 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1m1r.png|left|200px]]
 
-
<!--
+
==Reduced p222 crystal structure of the tetraheme cytochrome c of Shewanella oneidensis MR1==
-
The line below this paragraph, containing "STRUCTURE_1m1r", creates the "Structure Box" on the page.
+
<StructureSection load='1m1r' size='340' side='right'caption='[[1m1r]], [[Resolution|resolution]] 1.02&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1m1r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M1R FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.02&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1m1r| PDB=1m1r | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m1r OCA], [https://pdbe.org/1m1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m1r RCSB], [https://www.ebi.ac.uk/pdbsum/1m1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m1r ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8EDL6_SHEON Q8EDL6_SHEON]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/1m1r_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m1r ConSurf].
 +
<div style="clear:both"></div>
-
===Reduced p222 crystal structure of the tetraheme cytochrome c of Shewanella oneidensis MR1===
+
==See Also==
-
 
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12080059}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12080059 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12080059}}
+
-
 
+
-
==About this Structure==
+
-
1M1R is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M1R OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:12080059</ref><references group="xtra"/>
+
[[Category: Shewanella oneidensis]]
[[Category: Shewanella oneidensis]]
-
[[Category: Beeumen, J J.Van.]]
+
[[Category: Cusanovich MA]]
-
[[Category: Cusanovich, M A.]]
+
[[Category: Leys D]]
-
[[Category: Leys, D.]]
+
[[Category: Meyer TE]]
-
[[Category: Meyer, T E.]]
+
[[Category: Nealson KH]]
-
[[Category: Nealson, K H.]]
+
[[Category: Tsapin AI]]
-
[[Category: Tsapin, A I.]]
+
[[Category: Van Beeumen JJ]]
-
[[Category: Atomic resolution]]
+
-
[[Category: Reduced structure]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:22:24 2009''
+

Current revision

Reduced p222 crystal structure of the tetraheme cytochrome c of Shewanella oneidensis MR1

PDB ID 1m1r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools